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AT1G48000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 112
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB112).
Computational
Description (TAIR10)
myb domain protein 112 (MYB112); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 78 (TAIR:AT5G49620.1); Has 8716 Blast hits to 8036 proteins in 469 species: Archae - 0; Bacteria - 0; Metazoa - 760; Fungi - 469; Plants - 5758; Viruses - 6; Other Eukaryotes - 1723 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AK229083EMBL:AY008377
EMBL:AY519562EMBL:CP002684EnsemblPlants:AT1G48000EnsemblPlants:AT1G48000.1
entrez:841218Gene3D:1.10.10.60GeneID:841218GO:GO:0003677
GO:GO:0003700GO:GO:0006355GO:GO:0009651GO:GO:0009737
GO:GO:0009751GO:GO:0046686Gramene:AT1G48000.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF623HOGENOM:HOG000237600InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT1G48000KO:K09422ncoils:Coil
OMA:CNNEDIWPfam:PF00249Pfscan:PS51294PhylomeDB:Q94CJ3
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_564519.1SMART:SM00717
SMR:Q94CJ3STRING:3702.AT1G48000.1SUPFAM:SSF46689TAIR:AT1G48000
tair10-symbols:AtMYB112tair10-symbols:MYB112UniGene:At.16915UniProt:Q94CJ3
Coordinates (TAIR10) chr1:-:17704269..17706377
Molecular Weight (calculated) 28293.40 Da
IEP (calculated) 8.89
GRAVY (calculated) -0.71
Length 243 amino acids
Sequence (TAIR10)
(BLAST)
001: MNISRTEFAN CKTLINHKEE VEEVEKKMEI EIRRGPWTVE EDMKLVSYIS LHGEGRWNSL SRSAGLNRTG KSCRLRWLNY LRPDIRRGDI SLQEQFIILE
101: LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT RVQKHAKLLK CDVNSKQFKD TIKHLWMPRL IERIAATQSV QFTSNHYSPE NSSVATATSS TSSSEAVRSS
201: FYGGDQVEFG TLDHMTNGGY WFNGGDTFET LCSFDELNKW LIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)