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AT3G04070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC domain containing protein 47
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 47 (NAC047); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC-like, activated by AP3/PI (TAIR:AT1G69490.1); Has 3042 Blast hits to 3035 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3042; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:819562eggNOG:ENOG410IE3BeggNOG:ENOG410YB53EMBL:AK227417
EMBL:BT005985EMBL:CP002686EnsemblPlants:AT3G04070EnsemblPlants:AT3G04070.1
entrez:819562ExpressionAtlas:Q84TD6GeneID:819562GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT3G04070.1
hmmpanther:PTHR31719hmmpanther:PTHR31719:SF32HOGENOM:HOG000237406InterPro:IPR003441
OMA:YKKSHASPfam:PF02365Pfscan:PS51005PhylomeDB:Q84TD6
PROSITE:PS51005Proteomes:UP000006548RefSeq:NP_187057.2SMR:Q84TD6
STRING:3702.AT3G04070.1SUPFAM:SSF101941TAIR:AT3G04070tair10-symbols:anac047
tair10-symbols:NAC047UniGene:At.42943UniProt:Q84TD6
Coordinates (TAIR10) chr3:-:1061573..1062976
Molecular Weight (calculated) 40851.70 Da
IEP (calculated) 7.03
GRAVY (calculated) -0.78
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSSPVPLS IIADVDIYKS DPWDLPAKAP FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI
101: AVPNGEGFHE NIGIKKALVF YRGKPPKGVK TNWIMHEYRL ADSLSPKRIN SSRSGGSEVN NNFGDRNSKE YSMRLDDWVL CRIYKKSHAS LSSPDVALVT
201: SNQEHEENDN EPFVDRGTFL PNLQNDQPLK RQKSSCSFSN LLDATDLTFL ANFLNETPEN RSESDFSFMI GNFSNPDIYG NHYLDQKLPQ LSSPTSETSG
301: IGSKRERVDF AEETINASKK MMNTYSYNNS IDQMDHSMMQ QPSFLNQELM MSSHLQYQG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)