AT5G48410.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.991 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : glutamate receptor 1.3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
member of Putative ligand-gated ion channel subunit family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
glutamate receptor 1.3 (GLR1.3); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: Glutamate receptor family protein (TAIR:AT5G48400.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:19620316..19623277 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 97030.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.40 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 860 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MERFCIQTQT LLSFLLVLLL FISRSFASTK NDDVDGGKRV QIRVGLVLDL GSLKGKIVKN SVSMALSYFY AIHNDYKTRV SVSLRNSHGE PLLALASAVD 101: LLKTEGVEAI IGGNSLLEAK LLGELGEKAR VPMISLDSPF SLSLSKYTHL IQATHDSTSE AKGITSFINV FDWNSVALVY EDHDDWRESM QLLVEHFHEN 201: GVRVQSKVGF TVSSSEDFVM GRLQQLKDLG TTVFVVHLSE VIATHLFPCA RRLGLMGDGF VWILTAKTMN SFHENIDDFT KQAMEGVVGF KSYIPMSIEL 301: QNFTLRWRKS LPVEEAELTR LSISGIWAHD IAFALARAAE VIRMPNVTST LLEEITKTRF NGLSGDFQLN DKKLLSNKFE IINMIGSSER RVGFLNSNGS 401: FSNRRHLSST HNKLETIIWP GGSAQSPKGT SLIDSDRKKL RVLVTSSNRF PRLMKVETDP VTNELIVEGF CIEVFRASIS PFNYEVEYIP WLNGSNYDNL 501: AYALHSQKDK YDAAVGDITI TSNRSTYVDF TLPFTEMGLG IVAVKERSMW VFFQPLTPDL WITSAFFFVL TGVIVWLIER AENKEFQGSW PQQIGVVLWF 601: GFSTLVYAHR EKLKHNLSRF VVTVWVFAVL ILTASYTATL TSMMTVQQIR FNSNEDYVGH LSGSLIANVA LTSSSLRAMR SLGLNSAADY AQALLNKTVS 701: FVVDELPYLK VVLGENPTHF FMVKTQSTTN GFGFMFQKGF ELVPNVSREI SKLRTSEKLN EMEKRWFDNQ LPYTTDDTSN PITLYRFRGL FIIIGVSFAF 801: ALAVLVILCL RDKWEILVDN LDLSQRLRHF RIHFVRSIHT SPLDDPIGET AVQMAQQNRQ |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)