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AT1G67260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : TCP family transcription factor
Curator
Summary (TAIR10)
Encodes protein with TCP (TB1,CYC,PCF) domain which is likely to be involved in DNA binding and protein-protein interactions. Based on genome analysis, there is a 9-member gene family that possesses this domain in Arabidopsis. Orthologue of Antirrhinum gene CYCLOIDEA.
Computational
Description (TAIR10)
TCP1; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP domain protein 12 (TAIR:AT1G68800.1); Has 1624 Blast hits to 1624 proteins in 376 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1618; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioGrid:528019eggNOG:ENOG410JCYKeggNOG:ENOG410ZNX9EMBL:AC002130
EMBL:CP002684EMBL:DR751457EMBL:DR751458EnsemblPlants:AT1G67260
EnsemblPlants:AT1G67260.1entrez:3767658ExpressionAtlas:Q9FYG7GeneID:3767658
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009908hmmpanther:PTHR31072hmmpanther:PTHR31072:SF18HOGENOM:HOG000154530
InParanoid:Q9FYG7InterPro:IPR005333InterPro:IPR017887InterPro:IPR017888
KEGG:ath:AT1G67260OMA:ITQSEIMPaxDb:Q9FYG7Pfam:PF03634
Pfam:Q9FYG7Pfscan:PS51369Pfscan:PS51370PIR:D96696
PRIDE:Q9FYG7PRO:PR:Q9FYG7PROSITE:PS51369PROSITE:PS51370
ProteinModelPortal:Q9FYG7Proteomes:UP000006548RefSeq:NP_001077781.1STRING:3702.AT1G67260.1
TAIR:AT1G67260tair10-symbols:TCP1UniGene:At.71338UniProt:Q9FYG7
Coordinates (TAIR10) chr1:-:25168228..25169307
Molecular Weight (calculated) 40756.60 Da
IEP (calculated) 5.09
GRAVY (calculated) -0.80
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGK VWIQDSFVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)