AT1G69480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : EXS (ERD1/XPR1/SYG1) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
EXS (ERD1/XPR1/SYG1) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: stem, sepal, stamen, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G14040.1); Has 1143 Blast hits to 1074 proteins in 207 species: Archae - 0; Bacteria - 12; Metazoa - 268; Fungi - 392; Plants - 315; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26114187..26117479 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90603.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.33 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 777 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKFGKIFKKQ MVPEWVEAYV DYNGLKRVLK EIRSYKHSKL TRAASRVSQQ AEALHRSFSG LSFHPRHSER AGDIEDQVIK VDTVQEEGSR KLYETKFLKK 101: SEEGGEFEES FFKKLDENLN KVNKFYRDKV KEVIEEAALL DKQMDALIAL RVKMQKPDVD NLNLEKHPSD KVVVDTSDNT MRTQGTANTD MVHGIERTNI 201: PEEEASHIMA DIVPVSHTNG DEEEASIGDK QDLREILERV KMNDVLESPI TTLKGVFGDS NEPISKKGLK KGEEQLRLVF SEFYQKLRRL KEYSFMNLLA 301: FSKIMKKYEK IASRNASRNY MKIVDNSLIG SSDEVNRLLE RVEVTFVKHF SSGNRREGMK CLRPKVKRER HRVTFFSGFF SGCSIALVIA VVFKIESRKI 401: MEKNYGTEYM ANIIPLYSLF GFIILHMLMY SANIYFWKRY RVNYTFIFGF KQGTELGDRE VFLVSTGLAV LAFVCFLLNL QLDMDWRMKH HKTLPEVIPL 501: CLATIVLFIL FCPFNIIYRS SRFFFIRSLF HCICAPLYEV TLPDFFLGDH LTSQIQAIRS FELFICYYGL GEYLQRQNKC HSHGVYNAFY FVVAVIPYWL 601: RFLQCIRRLC EEKESVHGYN ALKYMLTIIA VIVRTAYELK KGRTWMILAL VSSGVATGMN TFWDIVIDWG LLRKHSKNPY LRDKLLVPHK SVYFAAMVVN 701: VILRVAWMQL VLEFNLKSLH KIAVTSIISC LEIIRRGIWS FFRLENEHLN NVGKYRAFKS VPHPFHYYDD DDVDKDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)