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AT5G58680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G01400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITMCeggNOG:ENOG410YBHSEMBL:AY084344EMBL:CP002688
EMBL:DQ447090EnsemblPlants:AT5G58680EnsemblPlants:AT5G58680.1entrez:835982
Gene3D:1.25.10.10GeneID:835982Gramene:AT5G58680.1hmmpanther:PTHR23315
hmmpanther:PTHR23315:SF64HOGENOM:HOG000084464InterPro:IPR000225InterPro:IPR011989
InterPro:IPR016024KEGG:ath:AT5G58680OMA:LCSTNENPfam:PF00514
Pfscan:PS50176PhylomeDB:Q8LGC7PROSITE:PS50176Proteomes:UP000006548
RefSeq:NP_200676.1SMART:SM00185SMR:Q8LGC7STRING:3702.AT5G58680.1
SUPFAM:SSF48371TAIR:AT5G58680UniGene:At.29268UniProt:Q8LGC7
Coordinates (TAIR10) chr5:-:23708247..23709320
Molecular Weight (calculated) 39040.70 Da
IEP (calculated) 4.95
GRAVY (calculated) -0.19
Length 357 amino acids
Sequence (TAIR10)
(BLAST)
001: MANHNSFTYM DHSFSDISLN FDSSAFSDCN SDISCEFPTT TSESRQRKLF LSCAVDNSDD VIRNLITHLE SSSSIEEQKQ AAMEIRLLSK NKPENRIKLA
101: KAGAIKPLVS LISSSDLQLQ EYGVTAVLNL SLCDENKEMI VSSGAVKPLV NALRLGTPTT KENAACALLR LSQVEENKIT IGRSGAIPLL VNLLENGGFR
201: AKKDASTALY SLCSTNENKT RAVESGIMKP LVELMIDFES DMVDKSAFVM NLLMSAPESK PAVVEEGGVP VLVEIVEAGT QRQKEISVSI LLQLCEESVV
301: YRTMVAREGA VPPLVALSQG SASRGAKVKA EALIELLRQP RQQQQQQQHF ESNDNER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)