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AT1G12610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.
Computational
Description (TAIR10)
DWARF AND DELAYED FLOWERING 1 (DDF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G63030.2); Has 5207 Blast hits to 5205 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5202; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSTAeggNOG:ENOG41108HVEMBL:AC025417EMBL:AK228194
EMBL:AY560892EMBL:CP002684EnsemblPlants:AT1G12610EnsemblPlants:AT1G12610.1
entrez:837817Gene3D:3.30.730.10GeneID:837817Genevisible:Q9LN86
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009408
GO:GO:0009414GO:GO:0010371GO:GO:0016049GO:GO:0043565
GO:GO:0044212GO:GO:0048510GO:GO:0050826Gramene:AT1G12610.1
hmmpanther:PTHR31839hmmpanther:PTHR31839:SF0HOGENOM:HOG000237624InParanoid:Q9LN86
InterPro:IPR001471InterPro:IPR016177iPTMnet:Q9LN86KEGG:ath:AT1G12610
OMA:YTEEEMCPaxDb:Q9LN86Pfam:PF00847Pfam:Q9LN86
Pfscan:PS51032PhylomeDB:Q9LN86PIR:H86259PRIDE:Q9LN86
PRINTS:PR00367PRO:PR:Q9LN86PROSITE:PS51032ProteinModelPortal:Q9LN86
Proteomes:UP000006548RefSeq:NP_172721.1SMART:SM00380SMR:Q9LN86
STRING:3702.AT1G12610.1SUPFAM:SSF54171TAIR:AT1G12610tair10-symbols:DDF1
UniGene:At.42068UniProt:Q9LN86
Coordinates (TAIR10) chr1:-:4290205..4290834
Molecular Weight (calculated) 23617.80 Da
IEP (calculated) 5.01
GRAVY (calculated) -0.61
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MNNDDIILAE MRPKKRAGRR VFKETRHPVY RGIRRRNGDK WVCEVREPTH QRRIWLGTYP TADMAARAHD VAVLALRGRS ACLNFADSAW RLPVPESNDP
101: DVIRRVAAEA AEMFRPVDLE SGITVLPCAG DDVDLGFGSG SGSGSGSEER NSSSYGFGDY EEVSTTMMRL AEGPLMSPPR SYMEDMTPTN VYTEEEMCYE
201: DMSLWSYRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)