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AT5G52020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response to fungus; LOCATED IN: chloroplast; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G12630.1); Has 5783 Blast hits to 5605 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5767; Viruses - 2; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:20522eggNOG:ENOG410J01JeggNOG:ENOG410YMJJEMBL:AB015478
EMBL:AK176464EMBL:AY086443EMBL:CP002688EnsemblPlants:AT5G52020
EnsemblPlants:AT5G52020.1entrez:835277Gene3D:3.30.730.10GeneID:835277
Genevisible:Q9FJ90GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009873GO:GO:0044212GO:GO:0050832Gramene:AT5G52020.1
hmmpanther:PTHR31985hmmpanther:PTHR31985:SF9HOGENOM:HOG000237624InParanoid:Q9FJ90
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT5G52020OMA:ENHEGDN
PaxDb:Q9FJ90Pfam:PF00847Pfam:Q9FJ90Pfscan:PS51032
PhylomeDB:Q9FJ90PRINTS:PR00367PRO:PR:Q9FJ90PROSITE:PS51032
ProteinModelPortal:Q9FJ90Proteomes:UP000006548RefSeq:NP_200015.1SMART:SM00380
SMR:Q9FJ90STRING:3702.AT5G52020.1SUPFAM:SSF54171TAIR:AT5G52020
UniGene:At.58041UniProt:Q9FJ90
Coordinates (TAIR10) chr5:-:21124192..21124890
Molecular Weight (calculated) 25107.50 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.58
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNNNNSPTT VNQETTTSRE VSITLPTDQS PQTSPGSSSS PSPRPSGGSP ARRTATGLSG KHSIFRGIRL RNGKWVSEIR EPRKTTRIWL GTYPVPEMAA
101: AAYDVAALAL KGPDAVLNFP GLALTYVAPV SNSAADIRAA ASRAAEMKQP DQGGDEKVLE PVQPGKEEEL EEVSCNSCSL EFMDEEAMLN MPTLLTEMAE
201: GMLMSPPRMM IHPTMEDDSP ENHEGDNLWS YK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)