suba logo
AT5G38700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.774
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZY7eggNOG:ENOG410YPGGEMBL:AK220688EMBL:CP002688
EnsemblPlants:AT5G38700EnsemblPlants:AT5G38700.1entrez:833860GeneID:833860
Gramene:AT5G38700.1hmmpanther:PTHR33265hmmpanther:PTHR33265:SF5HOGENOM:HOG000237679
InterPro:IPR008480KEGG:ath:AT5G38700OMA:GSCNEKCPfam:PF05553
PhylomeDB:Q570M0Proteomes:UP000006548RefSeq:NP_198686.2STRING:3702.AT5G38700.1
TAIR:AT5G38700UniGene:At.30392UniProt:Q570M0
Coordinates (TAIR10) chr5:+:15489690..15490238
Molecular Weight (calculated) 21672.40 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.95
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MGESKKKSRS MATQRAWSLV RMALLWGRKG GIFKRWHMFE LRNLFSKHLK ALNHHNSVDN NRYLTRYGEK QLSFDETPIF NVKMHRPTSM RFLLPCIARP
101: ADFDYDFELD GTQDDTDDVR SYGYYDGSCN EKCDRSANDD QEEEEEKGVD VRAEEFIAKF YEQMKLQRQI SYLQYKEHND VV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)