suba logo
AT1G19025.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.885
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA repair metallo-beta-lactamase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA repair metallo-beta-lactamase family protein; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: DNA repair metallo-beta-lactamase family protein (TAIR:AT1G27410.1); Has 1078 Blast hits to 1060 proteins in 342 species: Archae - 34; Bacteria - 280; Metazoa - 259; Fungi - 220; Plants - 166; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1236eggNOG:KOG1361EMBL:CP002684EnsemblPlants:AT1G19025
EnsemblPlants:AT1G19025.1entrez:838484Gene3D:3.60.15.10GeneID:838484
Gramene:AT1G19025.1hmmpanther:PTHR23240hmmpanther:PTHR23240:SF11InParanoid:F4IDZ7
InterPro:IPR001279InterPro:IPR011084iPTMnet:F4IDZ7KEGG:ath:AT1G19025
KO:K15340OMA:SLMELMNPaxDb:F4IDZ7Pfam:PF07522
PRIDE:F4IDZ7ProteinModelPortal:F4IDZ7Proteomes:UP000006548RefSeq:NP_564070.1
SMR:F4IDZ7STRING:3702.AT1G19025.1SUPFAM:SSF56281TAIR:AT1G19025
UniGene:At.41767UniGene:At.74256UniProt:F4IDZ7
Coordinates (TAIR10) chr1:+:6568920..6570800
Molecular Weight (calculated) 62147.60 Da
IEP (calculated) 7.49
GRAVY (calculated) -0.28
Length 549 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIEMPRGLP FAVDTFGPYT ETKRRKRHHF LTHAHKDHTV GVSPSNIVVF PIYSTSLTIS LLLQRFPQLD ESYFVRVEIG QSVIVDDPDG EFKVTAFDAN
101: HCPGAVMFLF EGSFGNILHT GDCRLTLDCL HSLPEKYVGR SHGMKPKCSL GYIFLDCTFG KSSHSQRFPT KHSAIRQIIN CIWNHPDAPV VYLACDMLGQ
201: EDVLLEVSRT FGSKIYVDKA TNLECFRSLM VIVPEIVSED PSSRFHIFSG FPKLYERTSA KLAEARSKLQ SEPLIIRPSA QWYVCDDEDD WKSGSIQKQR
301: KVRFSEAVKD EFGLWHVCYS MHSSRAELES AMQLLSPKWV VSTVPSCRAM ELNYVKKNCF ISRFSPDDPF WKLLDIDMEA SPVAAADTQT VALSCCLMSE
401: QIILDSGKSK LEPVIESSST KKKLLSLSPE NSLPVTLFGR ARQSSQECDQ LHERKVIHTQ CVYTKTSPVL EKLNVKVVIE PLQDDTKEET VEKESCTIFS
501: TSTSKETCKD LSGDLRKLYR SMNAPVPRPL PSLMELMNAR KRSRNHLSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)