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AT3G03030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G03040.1); Has 1867 Blast hits to 1823 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1867; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6486eggNOG:ENOG410JK5TeggNOG:ENOG410Z9JMEMBL:AC018363
EMBL:AK227875EMBL:BT006453EMBL:CP002686EnsemblPlants:AT3G03030
EnsemblPlants:AT3G03030.1entrez:821153Gene3D:3.80.10.10GeneID:821153
Gramene:AT3G03030.1hmmpanther:PTHR31639hmmpanther:PTHR31639:SF6HOGENOM:HOG000015201
InParanoid:Q9M8U4IntAct:Q9M8U4InterPro:IPR001810InterPro:IPR006566
InterPro:IPR032675KEGG:ath:AT3G03030OMA:KWEREEIPaxDb:Q9M8U4
Pfam:PF00646Pfam:PF08387Pfam:Q9M8U4PhylomeDB:Q9M8U4
PRIDE:Q9M8U4PRO:PR:Q9M8U4ProteinModelPortal:Q9M8U4Proteomes:UP000006548
RefSeq:NP_186953.1SMART:SM00579STRING:3702.AT3G03030.1SUPFAM:SSF52047
SUPFAM:SSF81383TAIR:AT3G03030UniGene:At.51346UniProt:Q9M8U4
Coordinates (TAIR10) chr3:+:682252..683850
Molecular Weight (calculated) 54397.60 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.18
Length 474 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLVSSLPDD VRCHILSFLT TKESALTSVL SKKWRNLFTL VPNLDLDDSE YLHPEETKWE REEILDSFLD FVERVLSLQG NGPIRRFSLR CESGVPPARL
101: NRWLCKVLQR GVADLELIID FEDGYLLPRE LFVSETLVNL RLKSEFGCIH WWPGAEGTFL PRLQSLDISS AMVFCDDKLQ KLLPCFPVIE ELRLVGMEWI
201: DSHVTVSCAT LTNQLLLSST GSRTSKNPKS VSFDTPNLLS LAYSDLVAED YPLVNMKSLF KARIILGVDD DQIARMRAPT NYLSEDDVVR RFGNVVKLMK
301: GIQNVQQLHL HSDTLEVLSM CCESMPVFNN VKTLGIKSDY DRGWQAVPAL LRNCPHLETL TFEGLVHHVT DKCGDACDCI FRKDKGRSLK SCPVKVVEIK
401: EFRVTMKEMH LIEHFLDNFP CLKEMKIYRE EYDPSPFGND PQVDDLILDM IEEYKDIYSC NVQLLEPCDK WDEQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)