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AT1G49840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.706
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF620)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF620); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT3G19540.1); Has 212 Blast hits to 211 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHG6eggNOG:ENOG41113AJEMBL:AC079674EMBL:AK228530
EMBL:AY065417EMBL:AY091246EMBL:CP002684EnsemblPlants:AT1G49840
EnsemblPlants:AT1G49840.1entrez:841407GeneID:841407Gramene:AT1G49840.1
hmmpanther:PTHR31300hmmpanther:PTHR31300:SF1HOGENOM:HOG000239944IntAct:Q9C6D0
InterPro:IPR006873KEGG:ath:AT1G49840OMA:TRIQSNDPfam:PF04788
PhylomeDB:Q9C6D0PIR:C96535Proteomes:UP000006548RefSeq:NP_175406.1
STRING:3702.AT1G49840.1TAIR:AT1G49840UniGene:At.28492UniProt:Q9C6D0
Coordinates (TAIR10) chr1:+:18452243..18454157
Molecular Weight (calculated) 53978.20 Da
IEP (calculated) 9.43
GRAVY (calculated) -0.42
Length 494 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKKQGFFSS LRDEVVRGLS PSRSRPRSRS ASPSRSTTPH MKALLWGRKK LIASSGCSGG GGVIGGERGG YYLSQPEPFI GRSSSLRPVM EGPDPDNGEV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)