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AT1G66180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G37540.1); Has 1897 Blast hits to 1884 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 164; Plants - 1696; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G66180-MONOMEReggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AC026480
EMBL:AY035077EMBL:AY051031EMBL:CP002684EnsemblPlants:AT1G66180
EnsemblPlants:AT1G66180.1entrez:842933Gene3D:2.40.70.10GeneID:842933
GO:GO:0004190GO:GO:0005794GO:GO:0009416GO:GO:0033591
Gramene:AT1G66180.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF327InterPro:IPR001461
InterPro:IPR021109InterPro:IPR032799InterPro:IPR032861InterPro:IPR033121
KEGG:ath:AT1G66180MEROPS:A01.A28OMA:NSHRFTTPANTHER:PTHR13683
Pfam:PF14541Pfam:PF14543Pfscan:PS51767PhylomeDB:Q9C8C9
PIR:F96686PRINTS:PR00792PROSITE:PS51767Proteomes:UP000006548
RefSeq:NP_564867.1SMR:Q9C8C9STRING:3702.AT1G66180.1SUPFAM:SSF50630
TAIR:AT1G66180UniGene:At.24736UniGene:At.71786UniProt:Q9C8C9
Coordinates (TAIR10) chr1:+:24647221..24648513
Molecular Weight (calculated) 47316.20 Da
IEP (calculated) 9.90
GRAVY (calculated) -0.10
Length 430 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPIPKPLFF FFFLNYVSLS TSLSLHLPLT SLPISTTTNS HRFTTSLLSR KNPSPSSPPY NFRSRFKYSM ALIISLPIGT PPQAQQMVLD TGSQLSWIQC
101: HRKKLPPKPK TSFDPSLSSS FSTLPCSHPL CKPRIPDFTL PTSCDSNRLC HYSYFYADGT FAEGNLVKEK ITFSNTEITP PLILGCATES SDDRGILGMN
201: RGRLSFVSQA KISKFSYCIP PKSNRPGFTP TGSFYLGDNP NSHGFKYVSL LTFPESQRMP NLDPLAYTVP MIGIRFGLKK LNISGSVFRP DAGGSGQTMV
301: DSGSEFTHLV DAAYDKVRAE IMTRVGRRLK KGYVYGGTAD MCFDGNVAMI PRLIGDLVFV FTRGVEILVP KERVLVNVGG GIHCVGIGRS SMLGAASNII
401: GNVHQQNLWV EFDVTNRRVG FAKADCSRVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)