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AT5G37540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G66180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G37540-MONOMEReggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AB025630
EMBL:AY054192EMBL:AY092990EMBL:BT000082EMBL:CP002688
EnsemblPlants:AT5G37540EnsemblPlants:AT5G37540.1entrez:833732Gene3D:2.40.70.10
GeneID:833732GO:GO:0003677GO:GO:0004190GO:GO:0016021
Gramene:AT5G37540.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF327HOGENOM:HOG000238458
InterPro:IPR001461InterPro:IPR001969InterPro:IPR021109InterPro:IPR032799
InterPro:IPR032861InterPro:IPR033121KEGG:ath:AT5G37540MEROPS:A01.A31
OMA:HSMEIGRPANTHER:PTHR13683Pfam:PF14541Pfam:PF14543
Pfscan:PS51767PhylomeDB:Q9FGI3PRINTS:PR00792PROSITE:PS00141
PROSITE:PS51767Proteomes:UP000006548RefSeq:NP_568551.1scanprosite:PS00141
SMR:Q9FGI3STRING:3702.AT5G37540.1SUPFAM:SSF50630TAIR:AT5G37540
TMHMM:TMhelixUniGene:At.9003UniProt:Q9FGI3
Coordinates (TAIR10) chr5:+:14912862..14914190
Molecular Weight (calculated) 48650.60 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.11
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTISKPLFL KLLYIFFFFC YSVSLSWSSS LSLHFPLTSL RLTPTTNSSS FKTSLLSRRN PSPPSSPYTF RSNIKYSMAL ILSLPIGTPS QSQELVLDTG
101: SQLSWIQCHP KKIKKPLPPP TTSFDPSLSS SFSDLPCSHP LCKPRIPDFT LPTSCDSNRL CHYSYFYADG TFAEGNLVKE KFTFSNSQTT PPLILGCAKE
201: STDEKGILGM NLGRLSFISQ AKISKFSYCI PTRSNRPGLA STGSFYLGDN PNSRGFKYVS LLTFPQSQRM PNLDPLAYTV PLQGIRIGQK RLNIPGSVFR
301: PDAGGSGQTM VDSGSEFTHL VDVAYDKVKE EIVRLVGSRL KKGYVYGSTA DMCFDGNHSM EIGRLIGDLV FEFGRGVEIL VEKQSLLVNV GGGIHCVGIG
401: RSSMLGAASN IIGNVHQQNL WVEFDVTNRR VGFSKAECRL LP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)