AT4G25620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 940 Blast hits to 722 proteins in 169 species: Archae - 0; Bacteria - 80; Metazoa - 158; Fungi - 130; Plants - 239; Viruses - 59; Other Eukaryotes - 274 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13067447..13069296 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 47720.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.30 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||
| Length | 449 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSVNNSSVD TVNAAASAIV SAESRTQPSS VQKKRGSWWS LYWCFGSKKN NKRIGHAVLV PEPAASGAAV APVQNSSSNS TSIFMPFIAP PSSPASFLPS 101: GPPSASHTPD PGLLCSLTVN EPPSAFTIGP YAHETQPVTP PVFSAFTTEP STAPFTPPPE SPSSPEVPFA QLLTSSLERA RRNSGGGMNQ KFSAAHYEFK 201: SCQVYPGSPG GNLISPGSGT SSPYPGKCSI IEFRIGEPPK FLGFEHFTAR KWGSRFGSGS ITPAGQGSRL GSGALTPDGS KLTSGVVTPN GAETVIRMSY 301: GNLTPLEGSL LDSQISEVAS LANSDHGSSR HNDEALVVPH RVSFELTGED VARCLASKLN RSGSHEKASG EHLRPNCCKT SGETESEQSQ KLRSFSTGSN 401: KEFKFDSTNE EMIEKIRSEW WANEKVAGKG DHSPRNSWTF FPVLRSGHT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)