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AT2G27830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC005824EMBL:AY065133
EMBL:AY087289EMBL:AY114584EMBL:CP002685EnsemblPlants:AT2G27830
EnsemblPlants:AT2G27830.1entrez:817330GeneID:817330Gramene:AT2G27830.1
hmmpanther:PTHR33270hmmpanther:PTHR33270:SF3HOGENOM:HOG000239118KEGG:ath:AT2G27830
OMA:SHVETHRPhylomeDB:Q9ZUY4PIR:E84677Proteomes:UP000006548
RefSeq:NP_565660.1STRING:3702.AT2G27830.1TAIR:AT2G27830UniGene:At.28225
UniGene:At.67282UniProt:Q9ZUY4
Coordinates (TAIR10) chr2:+:11860734..11861306
Molecular Weight (calculated) 21130.40 Da
IEP (calculated) 10.21
GRAVY (calculated) -0.43
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNGNRKTTP ETEKSHRRKL SEKAMSFHGR GTTPLSNPGE LRRPKTLPEL FSTGQSITVP ETVSLPPRLT KLLLNVTVQG SLGAVQIIIS PESTVSDLID
101: AAVRQYVKEA RRPFLPESEP SRFDLHYSQF SLESIVRDEK LISLGSRNFF LCGRKETGGF IGCGLSSESC SKEAEKVAKT GFHWLKFMGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)