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AT4G39570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39550.1); Has 1480 Blast hits to 1434 proteins in 111 species: Archae - 2; Bacteria - 64; Metazoa - 242; Fungi - 0; Plants - 1114; Viruses - 19; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AL078620EMBL:AL161595
EMBL:BT011610EMBL:BT012265EMBL:CP002687EnsemblPlants:AT4G39570
EnsemblPlants:AT4G39570.1entrez:830111Gene3D:2.130.10.80GeneID:830111
Genevisible:Q9SVA1Gramene:AT4G39570.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF23
HOGENOM:HOG000242515InParanoid:Q9SVA1InterPro:IPR001810InterPro:IPR006652
InterPro:IPR015916KEGG:ath:AT4G39570OMA:TVEWHEAPaxDb:Q9SVA1
Pfam:PF00646Pfam:PF01344Pfam:Q9SVA1Pfscan:PS50181
PhylomeDB:Q9SVA1PIR:T09373PRIDE:Q9SVA1PRO:PR:Q9SVA1
PROSITE:PS50181ProteinModelPortal:Q9SVA1Proteomes:UP000006548RefSeq:NP_195667.1
SMART:SM00256SMART:SM00612SUPFAM:0052715SUPFAM:SSF81383
TAIR:AT4G39570UniGene:At.31085UniProt:Q9SVA1
Coordinates (TAIR10) chr4:-:18384254..18385441
Molecular Weight (calculated) 45026.20 Da
IEP (calculated) 8.93
GRAVY (calculated) -0.32
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPERKRKR VTSTKNPSVK KKKKISPVPT PIPSLPDDLL VSIFARVSRL YYPILSLVSK SFRSLLRSPE LYETRSLLGR TESCLYLCLQ EGNPDPNPLW
101: FTLCMKPDRT LKNGKKKKKK KMSSGNLLIP IPVPNPPLEH WSGHASVGSD IYFFGGYMEE NVRSSRVVIL DCRSHTLREA PSLQMERSDP AASVIDGKIY
201: VAGGVDGDDA DSLYPIEVFD IKTQIWDHRP IPYWEKDWGA LSRSAYVDGK FYLTIGMKVM AYDLEESRWD FAGYQMGQSW FWSCNCVIEN VLYCYGDAFR
301: WFDTKLRLWK VMKVKGLPKL SRNVDVKIAD YGGKMAIFWD NPSPSASDTN KIIRCAVIAL ERPNSEEIWG TVEWHEAVLT VPVSYEFEHA LAVTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)