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AT3G17330.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.948
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : evolutionarily conserved C-terminal region 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
evolutionarily conserved C-terminal region 6 (ECT6); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 7 (TAIR:AT1G48110.2); Has 985 Blast hits to 959 proteins in 168 species: Archae - 0; Bacteria - 4; Metazoa - 419; Fungi - 125; Plants - 349; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YABQeggNOG:KOG1901EMBL:BT025338EMBL:CP002686
EnsemblPlants:AT3G17330EnsemblPlants:AT3G17330.1entrez:820996ExpressionAtlas:Q1JPL5
GeneID:820996GO:GO:0003723Gramene:AT3G17330.1hmmpanther:PTHR12357
hmmpanther:PTHR12357:SF22InterPro:IPR007275OMA:RECPIFLPfam:PF04146
Pfscan:PS50882PhylomeDB:Q1JPL5PROSITE:PS50882Proteomes:UP000006548
RefSeq:NP_188359.2SMR:Q1JPL5STRING:3702.AT3G17330.1TAIR:AT3G17330
tair10-symbols:ECT6UniGene:At.38744UniProt:Q1JPL5
Coordinates (TAIR10) chr3:-:5917253..5919458
Molecular Weight (calculated) 65653.00 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.68
Length 595 amino acids
Sequence (TAIR10)
(BLAST)
001: MYTEGASDFV IDQSMYYPAY YSSGYDSSVG LQGGQNENAP YICYTPSYGY AQSPYNPYNP YIPGASIGVD SSFVGFQQYY SDPPYESAAS SPTYVPYVIQ
101: PDMVSNSSTD SLVANGGQSD GRGSMQRNGS AIAGLPKDAP KSTTTGQYKQ PGIPKNVSTT ASAHSLQGKT AYANTLLPYG KSDIANGVSS IASYSYKPCS
201: KIYDARGDNN TTGSTYTSEQ NRGSRTRRSR NQLIVKAYTT KAGNADAEGN IVINPDRYNK EDFSIEYSDA RFFVIKSYSE DDVHKSIKYG VWSSTLNGNK
301: KLQSVYEDAQ RIATEKSREC PIFLFFSVNS SGLFCGVAEM TGPVSFDRDM DFWQQDKWSG SFPVKWHIIK DVPNSYFRHI ILHNNENKPV TNSRDTQEII
401: LKQGLEVLKL FKHHAEKTSL LDDFMYYEDR QRLMQEERAR LPFRTFRRPF PVLNLDFSDR SKKSSKDVVK KPSVTSAETK VVQLKNSDGD EKSNTQEATD
501: DSTPSTLKFG SLAIKPTAGT TFNPTQPKPK PTPSLGSDHK SDSSEEVTGS LADDIVSVGS LPIKVKGSKE LSSKIAAVGT SPLSTQDQFR SKPGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)