AT1G76350.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Plant regulator RWP-RK family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G20640.2); Has 692 Blast hits to 593 proteins in 43 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 620; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:28640143..28642817 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 90689.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.13 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 808 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MENNSLPMDP AMDSSFMDGL LLEGCWLETT DASEFLNFSP STSVAPFDPS SFMWSPTQDT SNSLSQMYGQ DCPERSSLED QNQGRDLSTF NRRWWIGPSG 101: HHGFSVMERL VQAVTHIKDF TSERGSLIQL WVPVDRGGKR VLTTKEQPFS HDPMCQRLAH YREISENYQF STEQEDSDSS SRDLVGLPGR VFLGKVPEWT 201: PDVRFFKNEE YPRVQHAQDC DVRGTLAIPV FEQGSQICLG VIEVVMTTQM VKLSPDLESI CRALQAVDLR STEIPIPPSL KGPDFSYQAA LPEIRNLLRC 301: ACETHKLPLA QTWVSCLKQS KTGCRHNDEN YIHCVSTIDD ACYVGDPTVR EFHEACSEHH LLKGQGVVGE AFLTNGPCFS SDVSSYKKSE YPLSHHATMF 401: GLHGTVAIRL RCIHTGSVDF VLEFFLPKNC RDIEEQRKML NALSTIMAHV PRSLRTVTQK ELEEEGDSMV SEVIEKGVTL PKIENTTEVH QSISTPQNVG 501: LVFDGGTTEM GELGSEYGKG VSVNENNTFS SASGFNRVTE KKRTKAEKNI TLDVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGIQRWP SRKIKKVGHS 601: LQKIQRVIDS VEGVSGHHLP IGSFYASFPN LAASPEASSL QQQSKITTFL SYSHSPPAKS PGSSCSHSSS CSSETQVIKE DPTDKTRLVS RSFKETQTTH 701: LSPSSQEDDF LRVKVSYEEE KIRFKMRNSH RLKDLLWEIA KRFSIEDVSR YDLKYLDEDN EWVLLRCDDD VEECVDVCRS FPGQTIKLLL QLSSSYLPER 801: SSVSGCLS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)