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AT1G76350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant regulator RWP-RK family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G20640.2); Has 692 Blast hits to 593 proteins in 43 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 620; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE3GeggNOG:ENOG41129QXEMBL:AB493537EMBL:AC009978
EMBL:AC012394EMBL:CP002684EnsemblPlants:AT1G76350EnsemblPlants:AT1G76350.1
entrez:843967GeneID:843967Genevisible:Q9SFW8GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT1G76350.1hmmpanther:PTHR32002hmmpanther:PTHR32002:SF6HOGENOM:HOG000237689
InParanoid:Q9SFW8InterPro:IPR000270InterPro:IPR003035KEGG:ath:AT1G76350
OMA:EKRRTKMPaxDb:Q9SFW8Pfam:PF00564Pfam:PF02042
Pfam:Q9SFW8Pfscan:PS51519Pfscan:PS51745PhylomeDB:Q9SFW8
PIR:A96791PRIDE:Q9SFW8PRO:PR:Q9SFW8PROSITE:PS51519
PROSITE:PS51745ProteinModelPortal:Q9SFW8Proteomes:UP000006548RefSeq:NP_177761.1
SMART:SM00666STRING:3702.AT1G76350.1SUPFAM:SSF54277TAIR:AT1G76350
UniGene:At.34668UniGene:At.48379UniProt:Q9SFW8
Coordinates (TAIR10) chr1:+:28640143..28642817
Molecular Weight (calculated) 90689.00 Da
IEP (calculated) 6.13
GRAVY (calculated) -0.47
Length 808 amino acids
Sequence (TAIR10)
(BLAST)
001: MENNSLPMDP AMDSSFMDGL LLEGCWLETT DASEFLNFSP STSVAPFDPS SFMWSPTQDT SNSLSQMYGQ DCPERSSLED QNQGRDLSTF NRRWWIGPSG
101: HHGFSVMERL VQAVTHIKDF TSERGSLIQL WVPVDRGGKR VLTTKEQPFS HDPMCQRLAH YREISENYQF STEQEDSDSS SRDLVGLPGR VFLGKVPEWT
201: PDVRFFKNEE YPRVQHAQDC DVRGTLAIPV FEQGSQICLG VIEVVMTTQM VKLSPDLESI CRALQAVDLR STEIPIPPSL KGPDFSYQAA LPEIRNLLRC
301: ACETHKLPLA QTWVSCLKQS KTGCRHNDEN YIHCVSTIDD ACYVGDPTVR EFHEACSEHH LLKGQGVVGE AFLTNGPCFS SDVSSYKKSE YPLSHHATMF
401: GLHGTVAIRL RCIHTGSVDF VLEFFLPKNC RDIEEQRKML NALSTIMAHV PRSLRTVTQK ELEEEGDSMV SEVIEKGVTL PKIENTTEVH QSISTPQNVG
501: LVFDGGTTEM GELGSEYGKG VSVNENNTFS SASGFNRVTE KKRTKAEKNI TLDVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGIQRWP SRKIKKVGHS
601: LQKIQRVIDS VEGVSGHHLP IGSFYASFPN LAASPEASSL QQQSKITTFL SYSHSPPAKS PGSSCSHSSS CSSETQVIKE DPTDKTRLVS RSFKETQTTH
701: LSPSSQEDDF LRVKVSYEEE KIRFKMRNSH RLKDLLWEIA KRFSIEDVSR YDLKYLDEDN EWVLLRCDDD VEECVDVCRS FPGQTIKLLL QLSSSYLPER
801: SSVSGCLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)