suba logo
AT4G22340.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytidinediphosphate diacylglycerol synthase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cytidinediphosphate diacylglycerol synthase 2 (CDS2); FUNCTIONS IN: phosphatidate cytidylyltransferase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374), Phosphatidate cytidylyltransferase, eukaryota (InterPro:IPR016720); BEST Arabidopsis thaliana protein match is: CDP-diacylglycerol synthase 1 (TAIR:AT1G62430.1); Has 7002 Blast hits to 6995 proteins in 2498 species: Archae - 0; Bacteria - 4913; Metazoa - 188; Fungi - 136; Plants - 138; Viruses - 0; Other Eukaryotes - 1627 (source: NCBI BLink).
Protein Annotations
EC:2.7.7.41eggNOG:COG0575eggNOG:KOG1440EMBL:AL021712
EMBL:AL161557EMBL:AY065310EMBL:AY084570EMBL:AY091315
EMBL:CP002687EnsemblPlants:AT4G22340EnsemblPlants:AT4G22340.1entrez:828329
ExpressionAtlas:O49639GeneID:828329Genevisible:O49639GO:GO:0004605
GO:GO:0016021GO:GO:0016024Gramene:AT4G22340.1gramene_pathway:2.7.7.41
gramene_pathway:PWY-5667gramene_pathway:PWY0-1319hmmpanther:PTHR13773hmmpanther:PTHR13773:SF13
HOGENOM:HOG000209582InterPro:IPR000374InterPro:IPR016720iPTMnet:O49639
KEGG:00564+2.7.7.41KEGG:04070+2.7.7.41PaxDb:O49639Pfam:O49639
Pfam:PF01148PIR:G85255PIR:T04915PIRSF:PIRSF018269
PRIDE:O49639PRO:PR:O49639PROSITE:PS01315ProteinModelPortal:O49639
Proteomes:UP000006548Reactome:R-ATH-1483148Reactome:R-ATH-1483226RefSeq:NP_193965.1
scanprosite:PS01315SMR:O49639STRING:3702.AT4G22340.3TAIR:AT4G22340
tair10-symbols:CDS2TMHMM:TMhelixUniGene:At.28460UniPathway:UPA00557
UniProt:O49639
Coordinates (TAIR10) chr4:-:11800150..11802549
Molecular Weight (calculated) 48249.80 Da
IEP (calculated) 9.80
GRAVY (calculated) 0.38
Length 423 amino acids
Sequence (TAIR10)
(BLAST)
001: MQKEIAGDAP SAPTTRVRHR KRNSDVGAGA GKPNGNHLLV NDSKKYKSFL IRAYSTFWMI GGFALIVYLG HLYITAMVVV IQIFMARELF NLLRKTHEDK
101: QLPGFRLLNW HFFFTAMLFV YGRILSQRLV NTVTPDKVLY RLVTSLIKYH MAICYSLYIS GFVWFILTLK KKMYKYQFSQ YAWTHMILIV VFTQSSFTVA
201: NIFEGIFWFL LPASLIVIND IFAYICGFFF GRTPLIKLSP KKTWEGFIGA SITTVISAFL LANIMGRFLW LTCPREDLST GWLLCDPGPL FKQETHALPG
301: WISDWLPWKE ISILPVQWHA LCLGLFASII APFGGFFASG FKRAFKIKDF GDSIPGHGGI TDRMDCQMVM AVFAYIYHQS FVVPEVLSVD KLLDQIITSL
401: TLEEQQALLV KLGQMLQEKV IGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)