AT4G22340.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cytidinediphosphate diacylglycerol synthase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
cytidinediphosphate diacylglycerol synthase 2 (CDS2); FUNCTIONS IN: phosphatidate cytidylyltransferase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374), Phosphatidate cytidylyltransferase, eukaryota (InterPro:IPR016720); BEST Arabidopsis thaliana protein match is: CDP-diacylglycerol synthase 1 (TAIR:AT1G62430.1); Has 7002 Blast hits to 6995 proteins in 2498 species: Archae - 0; Bacteria - 4913; Metazoa - 188; Fungi - 136; Plants - 138; Viruses - 0; Other Eukaryotes - 1627 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:11800150..11802549 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 48249.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.80 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 423 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MQKEIAGDAP SAPTTRVRHR KRNSDVGAGA GKPNGNHLLV NDSKKYKSFL IRAYSTFWMI GGFALIVYLG HLYITAMVVV IQIFMARELF NLLRKTHEDK 101: QLPGFRLLNW HFFFTAMLFV YGRILSQRLV NTVTPDKVLY RLVTSLIKYH MAICYSLYIS GFVWFILTLK KKMYKYQFSQ YAWTHMILIV VFTQSSFTVA 201: NIFEGIFWFL LPASLIVIND IFAYICGFFF GRTPLIKLSP KKTWEGFIGA SITTVISAFL LANIMGRFLW LTCPREDLST GWLLCDPGPL FKQETHALPG 301: WISDWLPWKE ISILPVQWHA LCLGLFASII APFGGFFASG FKRAFKIKDF GDSIPGHGGI TDRMDCQMVM AVFAYIYHQS FVVPEVLSVD KLLDQIITSL 401: TLEEQQALLV KLGQMLQEKV IGS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)