AT3G22425.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : imidazoleglycerol-phosphate dehydratase | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes imidazoleglycerolphosphate dehydratase. | ||||||||||||||||
| Computational Description (TAIR10) |
imidazoleglycerol-phosphate dehydratase (IGPD); FUNCTIONS IN: imidazoleglycerol-phosphate dehydratase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Imidazoleglycerol-phosphate dehydratase, conserved site (InterPro:IPR020565), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Imidazoleglycerol-phosphate dehydratase (InterPro:IPR000807); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 5B (TAIR:AT4G14910.1); Has 6614 Blast hits to 6614 proteins in 2210 species: Archae - 198; Bacteria - 4100; Metazoa - 4; Fungi - 195; Plants - 86; Viruses - 0; Other Eukaryotes - 2031 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7951110..7952537 | ||||||||||||||||
| Molecular Weight (calculated) | 28692.50 Da | ||||||||||||||||
| IEP (calculated) | 6.79 | ||||||||||||||||
| GRAVY (calculated) | 0.16 | ||||||||||||||||
| Length | 264 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELSSASAIL SHSSSAAQLL RPKLGFIDLL PRRAMIVSSP SSSLPRFLRM ESQSQLRQSI SCSASSSSSM ALGRIGEVKR VTKETNVSVK INLDGTGVAD 101: SSSGIPFLDH MLDQLASHGL FDVHVRATGD VHIDDHHTNE DIALAIGTAL LKALGERKGI NRFGDFTAPL DEALIHVSLD LSGRPYLGYN LEIPTQRVGT 201: YDTQVLSLLL ELSSFGFICV IRCLVIIESV AKNCLTFRFV VGGALFPVVG EYFWYDSSHP AARW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)