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AT5G08170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : porphyromonas-type peptidyl-arginine deiminase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 1873 (EMB1873); CONTAINS InterPro DOMAIN/s: Agmatine deiminase (InterPro:IPR017754), Peptidyl-arginine deiminase, Porphyromonas-type (InterPro:IPR007466); Has 2547 Blast hits to 2545 proteins in 784 species: Archae - 10; Bacteria - 1723; Metazoa - 8; Fungi - 32; Plants - 53; Viruses - 9; Other Eukaryotes - 712 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:MONOMER-2641DNASU:830713EC:3.5.3.12eggNOG:COG2957
eggNOG:ENOG410IFVCEMBL:AB062682EMBL:AK118589EMBL:AL357612
EMBL:BT005341EMBL:CP002688EnsemblPlants:AT5G08170EnsemblPlants:AT5G08170.1
entrez:830713EvolutionaryTrace:Q8GWW7GeneID:830713Genevisible:Q8GWW7
GO:GO:0004668GO:GO:0006596GO:GO:0033388GO:GO:0047632
Gramene:AT5G08170.1gramene_plant_reactome:1119304gramene_plant_reactome:6874819HAMAP:MF_01841
hmmpanther:PTHR31377hmmpanther:PTHR31377:SF2HOGENOM:HOG000239346InParanoid:Q8GWW7
InterPro:IPR007466InterPro:IPR017754iPTMnet:Q8GWW7KEGG:00330+3.5.3.12
KEGG:ath:AT5G08170KO:K10536OMA:PLYMTDEPaxDb:Q8GWW7
PDB:1VKPPDB:2Q3UPDB:3H7CPDB:3H7K
PDBsum:1VKPPDBsum:2Q3UPDBsum:3H7CPDBsum:3H7K
Pfam:PF04371Pfam:Q8GWW7PhylomeDB:Q8GWW7PIR:T50502
PRIDE:Q8GWW7PRO:PR:Q8GWW7ProteinModelPortal:Q8GWW7Proteomes:UP000006548
RefSeq:NP_196434.1SMR:Q8GWW7STRING:3702.AT5G08170.1SUPFAM:SSF55909
TAIR:AT5G08170tair10-symbols:ATAIHtair10-symbols:EMB1873TIGRfam:TIGR03380
TIGRFAMs:TIGR03380UniGene:At.25550UniPathway:UPA00534UniProt:Q8GWW7
Coordinates (TAIR10) chr5:-:2628663..2631047
Molecular Weight (calculated) 43157.70 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.47
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MEESRESPAE HGYYMPAEWD SHAQTWIGWP ERQDNWRHNA LPAQRVFADV AKAISKFEPV TVCASPAQWE NARKQLPEDI RVVEMSMNDS WFRDSGPTFI
101: VRKRPVKLSS LNRNIAGIDW NFNAWGGAND GCYNDWSHDL LVSRKILALE RIPRFQHSMI LEGGSIHVDG EGTCLVTEEC LLNKNRNPHM SKEQIEEELK
201: KYLGVQSFIW LPRGLYGDED TNGHIDNMCC FARPGVVLLS WTDDETDPQY ERSVEALSVL SNSIDARGRK IQVIKLYIPE PLYMTEEESS GITQDGEAIP
301: RLAGTRLAAS YVNFYIANGG IIAPQFGDPI RDKEAIRVLS DTFPHHSVVG IENAREIVLA GGNIHCITQQ QPAEPTSVAE NGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)