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AT1G20640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant regulator RWP-RK family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G76350.1); Has 665 Blast hits to 585 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 595; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Protein Annotations
BioGrid:23892eggNOG:ENOG410IE3GeggNOG:ENOG41129QXEMBL:AC027665
EMBL:AC069251EMBL:AY091015EMBL:AY117237EMBL:CP002684
EnsemblPlants:AT1G20640EnsemblPlants:AT1G20640.1EnsemblPlants:AT1G20640.2entrez:838653
GeneID:838653Genevisible:Q9LE38GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351Gramene:AT1G20640.1Gramene:AT1G20640.2
hmmpanther:PTHR32002hmmpanther:PTHR32002:SF6HOGENOM:HOG000237689InParanoid:Q9LE38
IntAct:Q9LE38InterPro:IPR000270InterPro:IPR003035KEGG:ath:AT1G20640
OMA:SQCCSSGPaxDb:Q9LE38Pfam:PF00564Pfam:PF02042
Pfam:Q9LE38Pfscan:PS51519Pfscan:PS51745PhylomeDB:Q9LE38
PIR:C86339PRIDE:Q9LE38PRO:PR:Q9LE38PROSITE:PS51519
PROSITE:PS51745ProteinModelPortal:Q9LE38Proteomes:UP000006548RefSeq:NP_173488.1
RefSeq:NP_973874.1SMART:SM00666STRING:3702.AT1G20640.1SUPFAM:SSF54277
TAIR:AT1G20640UniGene:At.41699UniProt:Q9LE38
Coordinates (TAIR10) chr1:+:7155201..7157986
Molecular Weight (calculated) 94236.90 Da
IEP (calculated) 5.45
GRAVY (calculated) -0.47
Length 844 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDSFLQSEN VVMDADFMDG LLLDGCWLET TDGSEFLNIA PSTSSVSPFD PTSFMWSPTQ DTSALCTSGV VSQMYGQDCV ERSSLDEFQW NKRWWIGPGG
101: GGSSVTERLV QAVEHIKDYT TARGSLIQLW VPVNRGGKRV LTTKEQPFSH DPLCQRLANY REISVNYHFS AEQDDSKALA GLPGRVFLGK LPEWTPDVRF
201: FKSEEYPRVH HAQDCDVRGT LAIPVFEQGS KICLGVIEVV MTTEMVKLRP ELESICRALQ AVDLRSTELP IPPSLKGCDL SYKAALPEIR NLLRCACETH
301: KLPLAQTWVS CQQQNKSGCR HNDENYIHCV STIDDACYVG DPTVREFHEA CSEHHLLKGQ GVAGQAFLTN GPCFSSDVSN YKKSEYPLSH HANMYGLHGA
401: VAIRLRCIHT GSADFVLEFF LPKDCDDLEE QRKMLNALST IMAHVPRSLR TVTDKELEEE SEVIEREEIV TPKIENASEL HGNSPWNASL EEIQRSNNTS
501: NPQNLGLVFD GGDKPNDGFG LKRGFDYTMD SNVNESSTFS SGGFSMMAEK KRTKADKTIT LDVLRQYFAG SLKDAAKNIG VCPTTLKRIC RQHGIQRWPS
601: RKIKKVGHSL QKIQRVIDSV QGVSGPLPIG SFYANFPNLV SQSQEPSQQA KTTPPPPPPV QLAKSPVSSY SHSSNSSQCC SSETQLNSGA TTDPPSTDVG
701: GALKKTSSEI ELQSSSLDET ILTLSSLENI PQGTNLLSSQ DDDFLRIKVS YGEEKIRLRM RNSRRLRDLL WEIGKRFSIE DMSRYDLKYL DEDNEWVLLT
801: CDEDVEECVD VCRTTPSHTI KLLLQASSHH FPERSSATEY SLWH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)