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AT1G10050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.956
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
Curator
Summary (TAIR10)
Encodes a putative glycosyl hydrolase family 10 protein (xylanase).
Computational
Description (TAIR10)
glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G58370.1); Has 2595 Blast hits to 2245 proteins in 443 species: Archae - 10; Bacteria - 1438; Metazoa - 33; Fungi - 351; Plants - 403; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G10050-MONOMERCAZy:CBM22CAZy:GH10eggNOG:COG3693
eggNOG:ENOG410IHCYEMBL:AC004122EMBL:CP002684EnsemblPlants:AT1G10050
EnsemblPlants:AT1G10050.1entrez:837540Gene3D:2.60.120.260Gene3D:3.20.20.80
GeneID:837540GO:GO:0005975GO:GO:0031176Gramene:AT1G10050.1
hmmpanther:PTHR31490hmmpanther:PTHR31490:SF1HOGENOM:HOG000237473InterPro:IPR001000
InterPro:IPR003305InterPro:IPR008979InterPro:IPR013781InterPro:IPR017853
InterPro:IPR031158KEGG:ath:AT1G10050OMA:NEYHIEDPfam:PF00331
Pfam:PF02018Pfscan:PS51760PhylomeDB:O80596PIR:T00624
PROSITE:PS00591PROSITE:PS51760Proteomes:UP000006548RefSeq:NP_172476.1
scanprosite:PS00591SMART:SM00633SMR:O80596STRING:3702.AT1G10050.1
SUPFAM:SSF49785SUPFAM:SSF51445TAIR:AT1G10050UniGene:At.42196
unipathway:UPA00114UniProt:O80596
Coordinates (TAIR10) chr1:+:3279270..3283444
Molecular Weight (calculated) 118378.00 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.32
Length 1063 amino acids
Sequence (TAIR10)
(BLAST)
0001: MADLNIVMNG DFFAGIEPWY PNGCEAFVVS SDPFSSEVMS ADSSSGGYVV VTNRKETWQG LEQDITTRVA SGMNYTVSTC VGVSGPFNES AEVLSTVRLE
0101: HEDSPTEYLC IGKTYASRDK WVDLEGTFSI SNMPDRVVLY LEGPAPGKDL LIRSVTVRSS TSSDFQETEK NTDASNVFPL ALNIIKNHDF SDGLYSWNTN
0201: GCDSFVVSSN DCNLESNAVV NNRSETWQGL EQDITDNVSP GFSYKVSASV SVSGPVLGSA QVLATLKLEH KSSATEFQLI GKTYASKDIW KTLEGTFEVS
0301: GRPDRVVFFL EGPPPGIDLL VKSVTIHCES DNQFERSREF CSAPESDNHI FLNSSFSDGL NHWSGRGCNL MLHESLADGK ILPDSGTCFA SASERTHKWS
0401: GIEQDITERV QRKLIYEASS VVRLSHSHHT VQATLYVQYL DQREEYIGIS SVQGTHDDWV ELKGKFLLNG SPARAVVYIE GPPPGIDVFV DHFAVKPAEK
0501: ETPSGRPYIE SHAFGMNIVS NSHLSDGTIE GWFPLGDCHL KVGDGSPRIL PPLARDSLRK TQGYLSGRYV LATNRSGTWM GPAQTITDKV KLFVTYQVSA
0601: WVKIGSGGRT SPQDVNIALS VDGNWVNGGK VEVDDGDWHE VVGSFRIEKE AKEVMLHVQG PSPGVDLMVA GLQIFAVDRK ARLSYLRGQA DVVRKRNVCL
0701: KFSGLDPSEL SGATVKIRQT RNSFPLGSCI SRSNIDNEDF VDFFLNNFDW AVFGYELKWY WTEPEQGNFN YRDANEMIEF CERYNIKTRG HCIFWEVESA
0801: IQPWVQQLTG SKLEAAVENR VTDLLTRYNG KFRHYDVNNE MLHGSFYRDR LDSDARANMF KTAHELDPLA TLFLNEYHIE DGFDSRSSPE KYIKLVHKLQ
0901: KKGAPVGGIG IQGHITSPVG HIVRSALDKL STLGLPIWFT ELDVSSTNEH IRGDDLEVML WEAFAHPAVE GVMLWGFWEL FMSREHSHLV NADGEVNEAG
1001: KRFLEIKREW LSFVDGEIED GGGLEFRGYH GSYTVEVVTS ESKYVTNFVV DKGNSPVDVI IDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)