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AT3G10500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.500
plasma membrane 0.500
ASURE: nucleus,plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 53
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 53 (NAC053); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 2 (TAIR:AT5G04410.1); Has 3039 Blast hits to 3027 proteins in 85 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 7; Plants - 3017; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
DNASU:820214eggNOG:ENOG410IF8UeggNOG:ENOG410YG99EMBL:AC011560
EMBL:AC013428EMBL:AY051003EMBL:AY079345EMBL:AY087802
EMBL:CP002686EnsemblPlants:AT3G10500EnsemblPlants:AT3G10500.1entrez:820214
GeneID:820214Genevisible:Q949N0GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0005737GO:GO:0005789GO:GO:0006351
GO:GO:0009819GO:GO:0010150GO:GO:0016021GO:GO:0045893
GO:GO:2000377Gramene:AT3G10500.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF43
InterPro:IPR003441iPTMnet:Q949N0KEGG:ath:AT3G10500OMA:RATEMGY
PaxDb:Q949N0Pfam:PF02365Pfam:Q949N0Pfscan:PS51005
PhylomeDB:Q949N0PRIDE:Q949N0PRO:PR:Q949N0PROSITE:PS51005
ProteinModelPortal:Q949N0Proteomes:UP000006548RefSeq:NP_566376.1SMR:Q949N0
STRING:3702.AT3G10500.1SUPFAM:SSF101941TAIR:AT3G10500tair10-symbols:anac053
tair10-symbols:NAC053TMHMM:TMhelixUniGene:At.21933UniProt:Q949N0
Coordinates (TAIR10) chr3:+:3271718..3273887
Molecular Weight (calculated) 62359.20 Da
IEP (calculated) 4.37
GRAVY (calculated) -0.65
Length 549 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGSVTSLA PGFRFHPTDE ELVRYYLKRK ICNKPFKFDA ISVTDVYKSE PWDLPDKSRL KSRDLEWYFF SMLDKKYRNG SKTNRATEMG YWKTTGKDRE
101: ILNGSKVVGM KKTLVYHKGR APRGERTNWV MHEYRLVDQD LDKTGVHQDA FVLCRIFQKS GSGPKNGEQY GAPFVEEEWE EEDDMTFVPD QEDLGSEDHV
201: YVHMDDIDQK SENFVVYDAI PIPLNFIHGE SSNNVETNYS DSINYIQQTG NYMDSGGYFE QPAESYEKDQ KPIIRDRDGS LQNEGIGCGV QDKHSETLQS
301: SDNIFGTDTS CYNDFPVESN YLIGEAFLDP NSNLLENDGL YLETNDLSST QQDGFDFEDY LTFFDETFDP SQLMGNEDVF FDQEELFQEV ETKELEKEET
401: SRSKHVVEEK EKDEASCSKQ VDADATEFEP DYKYPLLKKA SHMLGAIPAP LANASEFPTK DAAIRLHAAQ SSGSVHVTAG MITISDSNMG WSYGKNENLD
501: LILSLGLVQG NTAPEKSGNS SAWAMLIFMC FWVLLLSVSF KVSILVSSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)