AT3G10500.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.500 plasma membrane 0.500 ASURE: nucleus,plasma membrane What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : NAC domain containing protein 53 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
NAC domain containing protein 53 (NAC053); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 2 (TAIR:AT5G04410.1); Has 3039 Blast hits to 3027 proteins in 85 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 7; Plants - 3017; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:3271718..3273887 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 62359.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 549 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGRGSVTSLA PGFRFHPTDE ELVRYYLKRK ICNKPFKFDA ISVTDVYKSE PWDLPDKSRL KSRDLEWYFF SMLDKKYRNG SKTNRATEMG YWKTTGKDRE 101: ILNGSKVVGM KKTLVYHKGR APRGERTNWV MHEYRLVDQD LDKTGVHQDA FVLCRIFQKS GSGPKNGEQY GAPFVEEEWE EEDDMTFVPD QEDLGSEDHV 201: YVHMDDIDQK SENFVVYDAI PIPLNFIHGE SSNNVETNYS DSINYIQQTG NYMDSGGYFE QPAESYEKDQ KPIIRDRDGS LQNEGIGCGV QDKHSETLQS 301: SDNIFGTDTS CYNDFPVESN YLIGEAFLDP NSNLLENDGL YLETNDLSST QQDGFDFEDY LTFFDETFDP SQLMGNEDVF FDQEELFQEV ETKELEKEET 401: SRSKHVVEEK EKDEASCSKQ VDADATEFEP DYKYPLLKKA SHMLGAIPAP LANASEFPTK DAAIRLHAAQ SSGSVHVTAG MITISDSNMG WSYGKNENLD 501: LILSLGLVQG NTAPEKSGNS SAWAMLIFMC FWVLLLSVSF KVSILVSSR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)