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AT5G64250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.532
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aldolase-type TIM barrel family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aldolase-type TIM barrel family protein; FUNCTIONS IN: oxidoreductase activity, catalytic activity, nitronate monooxygenase activity; INVOLVED IN: response to cadmium ion, response to symbiotic fungus, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 2-nitropropane dioxygenase, NPD (InterPro:IPR004136); Has 10289 Blast hits to 10274 proteins in 2024 species: Archae - 22; Bacteria - 7122; Metazoa - 23; Fungi - 533; Plants - 70; Viruses - 0; Other Eukaryotes - 2519 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1188-MONOMERDNASU:836546eggNOG:COG2070eggNOG:ENOG410IHCK
EMBL:AY086032EMBL:CP002688EnsemblPlants:AT5G64250EnsemblPlants:AT5G64250.1
entrez:836546ExpressionAtlas:Q8LDF2Gene3D:3.20.20.70GeneID:836546
GO:GO:0018580GO:GO:0051213Gramene:AT5G64250.1hmmpanther:PTHR32332
hmmpanther:PTHR32332:SF20HOGENOM:HOG000123285InterPro:IPR004136InterPro:IPR013785
KEGG:00910+1.13.12.16Pfam:PF03060PhylomeDB:Q8LDF2Proteomes:UP000006548
RefSeq:NP_851263.1SMR:Q8LDF2STRING:3702.AT5G64250.2SUPFAM:SSF51412
TAIR:AT5G64250UniGene:At.20388UniGene:At.60184UniProt:Q8LDF2
Coordinates (TAIR10) chr5:-:25697623..25698752
Molecular Weight (calculated) 32092.70 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.05
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MNQECPDYLR ELIRKTKTLT EKPFGIGVVL AFPHDLNIKT ILEEKVAVLQ LYWGDCSQEL VDDAHFAGVK VIPQVGNVEE ARKAVAVGVD AIIVQGREAG
101: GHVIGKDGLF SLLPRVVDLV GERDIPVIAA GGIVDGRGYV AALSLGAQGV CLGTRFVATH ESYAHPIYKR KLIEYEKTEY TDVFGRARWP GAPQRVLETP
201: FFDDWRSLPA HENEVNQPII GRSTIHGVEK EIRRFSGTVP NMTTTGDLES MAMYAGQSVG LIKEILPAGE VVKSLVEEAQ ALILQKFNNA TTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)