AT4G19880.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.556 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Glutathione S-transferase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Glutathione S-transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase family protein (TAIR:AT5G45020.2); Has 2453 Blast hits to 2453 proteins in 809 species: Archae - 30; Bacteria - 1521; Metazoa - 25; Fungi - 239; Plants - 128; Viruses - 0; Other Eukaryotes - 510 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:10784691..10786376 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40577.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.37 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||
| Length | 356 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSYSTIISNT SFLSLASKFT TRGSRLQCTV SMARSAVDET SDSGAFQRTA STFRNFVSKD SNSQFPAESG RYHLYISYAC PWASRCLSYL KIKGLDDAIS 101: FSSVKPIWGR TKETDEHMGW VFPGSDTEVP GADPDHLNGA KSVRELYEIA SPNYTGKYTV PVLWDKKLKT VVNNESAEII RMFNTEFNHI AGNPDLDLYP 201: SHLQAKIDET NEWIYNGINN GVYRCGFAKK QGPYEEAVEQ VYEALDRCEE ILGKHRYICG NTLTETDIRL FVTLIRFDEV YAVHFKCNKK LIREYPNLFN 301: YTKDIFQIPG MSSTVNMNHI KQHYYGSHPS INPFGIIPHG PNIDYTSPHD RHRFSK |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)