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AT3G47730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-binding cassette A2
Curator
Summary (TAIR10)
member of ATH subfamily
Computational
Description (TAIR10)
ATP-binding cassette A2 (ABCA2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 11 (TAIR:AT5G61730.1); Has 380556 Blast hits to 352092 proteins in 4023 species: Archae - 7135; Bacteria - 302205; Metazoa - 7915; Fungi - 4655; Plants - 4588; Viruses - 7; Other Eukaryotes - 54051 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G47730-MONOMEReggNOG:ENOG410IPJIeggNOG:ENOG410XXUPEMBL:AL049746
EMBL:BT004197EMBL:BT005456EMBL:CP002686EnsemblPlants:AT3G47730
EnsemblPlants:AT3G47730.1entrez:823927Gene3D:3.40.50.300GeneID:823927
Genevisible:Q84K47GO:GO:0005215GO:GO:0005524GO:GO:0006869
GO:GO:0016021GO:GO:0042626GO:GO:0043231GO:GO:0055085
Gramene:AT3G47730.1hmmpanther:PTHR19229HOGENOM:HOG000006337InParanoid:Q84K47
InterPro:IPR003439InterPro:IPR003593InterPro:IPR017871InterPro:IPR026082
InterPro:IPR027417KEGG:ath:AT3G47730OMA:SLCISGHPANTHER:PTHR19229
PaxDb:Q84K47Pfam:PF00005Pfam:PF12698Pfam:Q84K47
Pfscan:PS50893PhylomeDB:Q84K47PIR:T07712PRIDE:Q84K47
PRO:PR:Q84K47PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q84K47
Proteomes:UP000006548RefSeq:NP_190357.2scanprosite:PS00211SMART:SM00382
SMR:Q84K47STRING:3702.AT3G47730.1SUPFAM:SSF52540SwissPalm:Q84K47
TAIR:AT3G47730tair10-symbols:ABCA2tair10-symbols:ATATH1tair10-symbols:ATH1
TMHMM:TMhelixUniGene:At.23005UniProt:Q84K47
Coordinates (TAIR10) chr3:-:17594342..17598828
Molecular Weight (calculated) 108694.00 Da
IEP (calculated) 7.92
GRAVY (calculated) 0.08
Length 983 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLQRGLPLL LQQYTALFKK NLLLSWRSKR ATFLQLFASF FFILLIFCIQ AAMEKSFASS TALKTVTDPT ALISPPIPPC EDKFFVNLPC YDFVWSGNRS
101: SKVTQIVNAI MKNNPGRSIP IEKVRSFVDP EAVDTWLMAN PLLVPGALHF IERNATVISY GIQTNSTPEM NRGRFEDPTF KFQIPLQIAA EREIARSLIG
201: DPNFNWVVGF KEFPHPTIEA IVALDTIGPT FFLAVAMFGF VLQISSLITE KELKLRQAMT MMGVFDTAYW LSWLTWEGIL TAISALLTVL FGMMFQFDFF
301: LKNSFPVVFL LFMLFQFNLI GLAFMLSAFI SKSTSATTVG FFVFLVGFVT QLATSSGFPY AKKYSRMIRA LWSLFPPNTF SQGLKLLADA TSTPQDPGIS
401: WSKRAECGPN DDTGCVLTIN DIYLWLLGTF FLWFVLALYF DNITPNASGV RKSIFYFLKP GYWTGKGGNR VEEGGICSCI GSVPPVDHIT PDDEDVLEEE
501: TLVKQHSMEG LVDPNVAVQI RGLAKTYPGT TKFGCCKCKK TSPFHALKGL WMNIAKDQLF CLLGPNGAGK TTTINCLTGL FPVTGGDALI YGNSIRSSVG
601: MSNIRKMIGV CPQFDILWDA LSGEEHLKLF ASIKGLPPSS INSMVEKSLA EVKLTEAGKI RAGSYSGGMK RRLSVAVSLI GDPKLVFLDE PTTGMDPITR
701: RHVWDIIQET KKGRAIILTT HSMEEADILS DRIGIMAKGR LRCIGTSIRL KSRFGTGFIA NISFVESNNH NGEAGSDSRE PVKKFFKDHL KVKPIEENKA
801: FMTFVIPHDK ENLLTSFFAE LQDREEEFGI SDIQLGLATL EEVFLNIARK AELESAAVDG TMVTLDLTSG SSVEIPVGAR FIGIPGTETA ENPRGVMVEV
901: YWQQDESGSL CISGHSTEMP IPENIPVTDP VAPGHGGVNL LGRRGRRQVQ GIVIDPEFAT FTRSGSTSSR RFSRSGSSRR FSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)