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AT3G47780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:30875866 (2019): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ABC2 homolog 6
Curator
Summary (TAIR10)
member of ATH subfamily
Computational
Description (TAIR10)
ABC2 homolog 6 (ATH6); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 2 (TAIR:AT3G47740.1); Has 392088 Blast hits to 359274 proteins in 4025 species: Archae - 7301; Bacteria - 309060; Metazoa - 8340; Fungi - 5303; Plants - 5008; Viruses - 16; Other Eukaryotes - 57060 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G47780-MONOMERBioGrid:9252eggNOG:COG1131eggNOG:KOG0059
EMBL:AL049746EMBL:CP002686EnsemblPlants:AT3G47780EnsemblPlants:AT3G47780.1
entrez:823932Gene3D:3.40.50.300GeneID:823932Genevisible:Q9STT5
GO:GO:0005215GO:GO:0005524GO:GO:0005886GO:GO:0006869
GO:GO:0009506GO:GO:0016021GO:GO:0042626GO:GO:0043231
GO:GO:0055085Gramene:AT3G47780.1hmmpanther:PTHR19229hmmpanther:PTHR19229:SF127
HOGENOM:HOG000029960InParanoid:Q9STT5InterPro:IPR003439InterPro:IPR003593
InterPro:IPR017871InterPro:IPR026082InterPro:IPR027417iPTMnet:Q9STT5
KEGG:ath:AT3G47780OMA:FNVSVWYPANTHER:PTHR19229PaxDb:Q9STT5
Pfam:PF00005Pfam:PF12698Pfam:Q9STT5Pfscan:PS50893
PhylomeDB:Q9STT5PIR:T07717PRIDE:Q9STT5PRO:PR:Q9STT5
PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q9STT5Proteomes:UP000006548
RefSeq:NP_190362.2scanprosite:PS00211SMART:SM00382SMR:Q9STT5
STRING:3702.AT3G47780.1SUPFAM:SSF52540TAIR:AT3G47780tair10-symbols:ATATH6
tair10-symbols:ATH6TMHMM:TMhelixUniGene:At.35773UniProt:Q9STT5
Coordinates (TAIR10) chr3:+:17624500..17628972
Molecular Weight (calculated) 105053.00 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.06
Length 935 amino acids
Sequence (TAIR10)
(BLAST)
001: MADPGPASFS TRANALLRKN LTYQKRNLWS NIRLIMIPFY LCILLVIIQI LFDTQVNNSA DNRCGCECIE RNRAGKCQRE LCGLEHSKPD QAFFCSIPRP
101: PLWPPLLQIP RPESRDVRGL RDDSCRRTGS CPVTILFTGN NRSLGTTVSE NLFTSSVSAN ASEILRTLAN NVLGTTVEAD FTNYLDPGIA SNLSIYNIQP
201: RCILNATFPF SFEQPPLKFE KELRCVQGSN LWTNTSKEVN DKIFKGYKKG NPEGKINEIA AAYDLLNTDR NNFNVHIWYN STYKDDAGNR LIKLIRVPRS
301: VNLVSNAYLQ FLQGPGTRML FEYVKEMPKP ETSLRLDIAS LIGPLFFTWV ILLLFPVILS SLVYEKQQHL RIIMKMHGLG DGPYWMISYA YFLTISVLYV
401: ICLMIFGSAI GLKFFRLNSY SIQFVFYFLY LNLQIALAFL VSSVFSKVKT STVASYIYVF GSGLLGLFLL NFLIEDSSFP RGWIIVMELY PGFSLYRGLY
501: ELAQFAFRGN LRGEDGMKWK DFGDSAMDDV FYIIVVEWFL ALIAAYYIDK ISSSGRNPLF FLQNPFKKSP SLRRPSLQRQ GSKVSVDMEK PDVTHESKKV
601: ERLMLESSTS HAIVCDNLKK VYPGRDGNPP KLAVRGLSLA VPSGECFGML GPNGAGKTSF INMMTGLLKP TSGTALVQGL DICNDMDRVY TSMGVCPQHD
701: LLWETLTGRE HLLFYGRLKN LKGADLNQAV EESLKSVNLF HGGVADKPAG KYSGGMKRRL SVAISLIGNP KVVYMDEPST GLDPASRKNL WTVIKRAKQN
801: TAIILTTHSM EEAEFLCDRL GIFVDGGLQC IGNPKELKGR YGGSYVFTMT TSSEHEQNVE KLIKDVSPNA KKIYHIAGTQ KFELPKEEVR ISEVFQAVEK
901: AKSNFTVFAW GLADTTLEDV FIKVVRNGQA FNVFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)