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AT2G41160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.949
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-associated (UBA) protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-associated (UBA) protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protein (TAIR:AT3G56740.1); Has 271 Blast hits to 270 proteins in 111 species: Archae - 2; Bacteria - 0; Metazoa - 75; Fungi - 97; Plants - 72; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111CBKeggNOG:KOG4463EMBL:AC004261EMBL:AY080734
EMBL:AY133793EMBL:CP002685EnsemblPlants:AT2G41160EnsemblPlants:AT2G41160.1
entrez:818715Gene3D:1.20.1540.10GeneID:818715Genevisible:Q8RXQ2
GO:GO:0004252GO:GO:0016021Gramene:AT2G41160.1hmmpanther:PTHR12917
hmmpanther:PTHR12917:SF20HOGENOM:HOG000237751InterPro:IPR009060InterPro:IPR015940
InterPro:IPR022764KEGG:ath:AT2G41160OMA:NIFGIRKPaxDb:Q8RXQ2
Pfam:PF00627Pfam:PF01694Pfam:PF04511Pfscan:PS50030
PhylomeDB:Q8RXQ2PIR:T02103PRIDE:Q8RXQ2PRO:PR:Q8RXQ2
PROSITE:PS50030ProteinModelPortal:Q8RXQ2Proteomes:UP000006548RefSeq:NP_850346.1
SMART:SM00165STRING:3702.AT2G41160.1SUPFAM:SSF144091SUPFAM:SSF46934
TAIR:AT2G41160TMHMM:TMhelixUniGene:At.27719UniProt:Q8RXQ2
Coordinates (TAIR10) chr2:-:17156314..17158687
Molecular Weight (calculated) 31691.50 Da
IEP (calculated) 10.65
GRAVY (calculated) 0.33
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGGPSGFNN APVTKAFVIA TALFTVFFGI RGGSSKLGLS YQDIFEKFRI WKLIISAFAF SSTTQLLSGL YLLYFFRVFE RQIGSNKYSV FIFFSGFVSL
101: ILETILLSLT KDPTANLLTS GPYALVFASF VPFFLDIPVT KRFGVLGVHF SDKSFIYLAG VQLLLSSWKR SIFTGICGII AGSLYRLNIF GIRKAKFPEF
201: MASLFSRFSL PSLSSHSQPP RRTSPNLGRQ AVRAYRAPMP STTEPSEEAI ATLVSMGFDQ NAARQALVHA RNDVNAATNI LLEAHSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)