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AT5G54860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G64890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFK5eggNOG:ENOG410XRKZEMBL:AB005232EMBL:AY091775
EMBL:CP002688EnsemblPlants:AT5G54860EnsemblPlants:AT5G54860.1entrez:835577
GeneID:835577Genevisible:Q8RWQ5GO:GO:0006810GO:GO:0016021
Gramene:AT5G54860.1hmmpanther:PTHR31585hmmpanther:PTHR31585:SF7HOGENOM:HOG000237705
InParanoid:Q8RWQ5InterPro:IPR004324InterPro:IPR020846KEGG:ath:AT5G54860
OMA:ETIFLLFPaxDb:Q8RWQ5Pfam:PF03092Pfam:Q8RWQ5
PhylomeDB:Q8RWQ5PRIDE:Q8RWQ5PRO:PR:Q8RWQ5ProteinModelPortal:Q8RWQ5
Proteomes:UP000006548RefSeq:NP_200297.2SMR:Q8RWQ5STRING:3702.AT5G54860.1
SUPFAM:SSF103473TAIR:AT5G54860TIGRfam:TIGR00788TIGRFAMs:TIGR00788
TMHMM:TMhelixUniGene:At.29472UniProt:Q8RWQ5
Coordinates (TAIR10) chr5:+:22284721..22287025
Molecular Weight (calculated) 53886.30 Da
IEP (calculated) 9.49
GRAVY (calculated) 0.43
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MIHWLKQLRS AFGVAFLWLV CLIYFTQGFR SFVWTAVSYQ LKDRLQLSPS ASQFVFSVAF FPWSIKPLYG IISDCIPIGG KKRTPYLVIS TVLSLVPWLV
101: LGLDSTSRSS SLYLMIFLTV QNLGSAMADV VIDAMIAEAV RLEKASFAGD LQSVSWFAMA VGGVCGSLLG GYALSNLKIE TIFLLFTVLP ALQLLSCALV
201: EESPANNEPL PELLDSNEFE EKSLTSNDNY PDTSKSNTRR RKGQKKGKKG DSNGKSETQK KQSKSLASQW FQSLKAATFG LGRAFKQPII LRPMAWFFIA
301: HITVPNLSTV MFYYQTEVLQ LDAAFLGTAR VVGWLGLMFG TFIYNRYLQD MTLRKSLLFA HIGLSVTILL DMVLVSRANV GYGVSDKTMV LFGSALGDAI
401: NQLKFMPFLI LSGRLCPPGI EGTLFALFMS INNLGNTVGS FMGAGLASLL GISSGSFDNM FMGLAIQVFC TYIPVLFLFL IPKEATGVSA S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)