AT2G43500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant regulator RWP-RK family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT3G59580.2); Has 665 Blast hits to 521 proteins in 81 species: Archae - 0; Bacteria - 147; Metazoa - 3; Fungi - 2; Plants - 476; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18062715..18066450 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104889.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.37 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 947 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENPFASREK GFGNYSDFPT EQMDGLSSNF GSGVRNLISD DMFNPSSELM NFDSLAAWCN SPSATDILFA QYGLSNSQPM PFGAFTSFHV ADPKATSLTR 101: SFYDLESSYY GEERSSAQEM NSQFHRSSDS DELSGKRRKV VNQKIGFPNV LNCTIPRSLS HSLDEKMLKA LSLFMESSGS GEGILAQVWT PIKTGDQYLL 201: STCDQAYLLD PRFSQYREVS RRFTFAAEAN QCSFPGLPGR VFISGVPEWT SNVMYYKTDE YLRMKHAIDN EVRGSIAIPI LEASGTSCCA VMELVTSKEK 301: PNFDMEMDSV CRALQAVNLR TAAIPRPQYL SSSQRDALAE IQDVLRTVCH AHKLPLALAW IPCRKDQSIR VSGQKSGENC ILCIEETACY VNDMEMEGFV 401: HACLEHCLRE KEGIVGKAFI SNQPFFSSDV KAYDISEYPI VQHARKYGLN AAVAIKLRST YTGEDDYILE LFLPVSMKGS LEQQLLLDSL SGTMQRICRT 501: LRTVSEVGST KKEGTKPGFR SSDMSNFPQT TSSENFQTIS LDSEFNSTRS MFSGMSSDKE NSITVSQGTL EQDVSKARTP EKKKSTTEKN VSLSALQQHF 601: SGSLKDAAKS LGGETSAYFQ AWVYFFCPTT LKRICRQHGI MRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLKFDSATGE FIAVRPFIQE IDTQKGLSSL 701: DNDAHARRSQ EDMPDDTSFK LQEAKSVDNA IKLEEDTTMN QARPGSFMEV NASGQPWAWM AKESGLNGSE GIKSVCNLSS VEISDGMDPT IRCSGSIVEP 801: NQSMSCSISD SSNGSGAVLR GSSSTSMEDW NQMRTHNSNS SESGSTTLIV KASYREDTVR FKFEPSVGCP QLYKEVGKRF KLQDGSFQLK YLDDEEEWVM 901: LVTDSDLQEC LEILHGMGKH SVKFLVRDLS APLGSSGGSN GYLGTGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)