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AT4G18130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytochrome E
Curator
Summary (TAIR10)
member of Histidine Kinase
Computational
Description (TAIR10)
phytochrome E (PHYE); FUNCTIONS IN: protein histidine kinase activity, G-protein coupled photoreceptor activity, signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 25391 Blast hits to 25044 proteins in 3724 species: Archae - 289; Bacteria - 19481; Metazoa - 8; Fungi - 476; Plants - 4006; Viruses - 9; Other Eukaryotes - 1122 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1963-MONOMERBioGrid:12831eggNOG:COG0642eggNOG:COG4251
eggNOG:ENOG410IPETEMBL:AK221424EMBL:AL110123EMBL:AL161548
EMBL:CP002687EMBL:X76610EnsemblPlants:AT4G18130EnsemblPlants:AT4G18130.1
entrez:827538Gene3D:3.30.450.40Gene3D:3.30.565.10GeneID:827538
Genevisible:P42498GO:GO:0000155GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009584GO:GO:0009585GO:GO:0009881
GO:GO:0017006GO:GO:0018298Gramene:AT4G18130.1hmmpanther:PTHR24423
hmmpanther:PTHR24423:SF563HOGENOM:HOG000272703InParanoid:P42498IntAct:P42498
InterPro:IPR000014InterPro:IPR001294InterPro:IPR003018InterPro:IPR003594
InterPro:IPR003661InterPro:IPR005467InterPro:IPR012129InterPro:IPR013515
InterPro:IPR013516InterPro:IPR013654InterPro:IPR013767InterPro:IPR016132
InterPro:IPR029016KEGG:ath:AT4G18130KO:K12123OMA:ARFLFKQ
PaxDb:P42498Pfam:P42498Pfam:PF00360Pfam:PF00512
Pfam:PF00989Pfam:PF01590Pfam:PF02518Pfam:PF08446
Pfscan:PS50046Pfscan:PS50109Pfscan:PS50112PIR:S46313
PIRSF:PIRSF000084PRIDE:P42498PRINTS:PR01033PRO:PR:P42498
PROSITE:PS00245PROSITE:PS50046PROSITE:PS50109PROSITE:PS50112
ProteinModelPortal:P42498Proteomes:UP000006548RefSeq:NP_193547.4scanprosite:PS00245
SMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388
SMR:P42498STRING:3702.AT4G18130.1SUPFAM:SSF55781SUPFAM:SSF55785
SUPFAM:SSF55874TAIR:AT4G18130tair10-symbols:PHYETIGRfam:TIGR00229
TIGRFAMs:TIGR00229UniGene:At.32943UniGene:At.70995UniProt:P42498
Coordinates (TAIR10) chr4:-:10042312..10045948
Molecular Weight (calculated) 122523.00 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.14
Length 1112 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGFESSSSAA SNMKPQPQKS NTAQYSVDAA LFADFAQSIY TGKSFNYSKS VISPPNHVPD EHITAYLSNI QRGGLVQPFG CLIAVEEPSF RILGLSDNSS
0101: DFLGLLSLPS TSHSGEFDKV KGLIGIDART LFTPSSGASL SKAASFTEIS LLNPVLVHSR TTQKPFYAIL HRIDAGIVMD LEPAKSGDPA LTLAGAVQSQ
0201: KLAVRAISRL QSLPGGDIGA LCDTVVEDVQ RLTGYDRVMV YQFHEDDHGE VVSEIRRSDL EPYLGLHYPA TDIPQAARFL FKQNRVRMIC DCNATPVKVV
0301: QSEELKRPLC LVNSTLRAPH GCHTQYMANM GSVASLALAI VVKGKDSSKL WGLVVGHHCS PRYVPFPLRY ACEFLMQAFG LQLQMELQLA SQLAEKKAMR
0401: TQTLLCDMLL RDTVSAIVTQ SPGIMDLVKC DGAALYYKGK CWLVGVTPNE SQVKDLVNWL VENHGDDSTG LTTDSLVDAG YPGAISLGDA VCGVAAAGFS
0501: SKDYLLWFRS NTASAIKWGG AKHHPKDKDD AGRMHPRSSF TAFLEVAKSR SLPWEISEID AIHSLRLIMR ESFTSSRPVL SGNGVARDAN ELTSFVCEMV
0601: RVIETATAPI FGVDSSGCIN GWNKKTAEMT GLLASEAMGK SLADEIVQEE SRAALESLLC KALQGEEEKS VMLKLRKFGQ NNHPDYSSDV CVLVNSCTSR
0701: DYTENIIGVC FVGQDITSEK AITDRFIRLQ GDYKTIVQSL NPLIPPIFAS DENACCSEWN AAMEKLTGWS KHEVIGKMLP GEVFGVFCKV KCQDSLTKFL
0801: ISLYQGIAGD NVPESSLVEF FNKEGKYIEA SLTANKSTNI EGKVIRCFFF LQIINKESGL SCPELKESAQ SLNELTYVRQ EIKNPLNGIR FAHKLLESSE
0901: ISASQRQFLE TSDACEKQIT TIIESTDLKS IEEGKLQLET EEFRLENILD TIISQVMIIL RERNSQLRVE VAEEIKTLPL NGDRVKLQLI LADLLRNIVN
1001: HAPFPNSWVG ISISPGQELS RDNGRYIHLQ FRMIHPGKGL PSEMLSDMFE TRDGWVTPDG LGLKLSRKLL EQMNGRVSYV REDERCFFQV DLQVKTMLGV
1101: ESRGTEGSSS IK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)