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AT4G16250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytochrome D
Curator
Summary (TAIR10)
Encodes a phytochrome photoreceptor with a function similar to that of phyB that absorbs the red/far-red part of the light spectrum and is involved in light responses. It cannot compensate for phyB loss in Arabidopsis but can substitute for tobacco phyB in vivo.
Computational
Description (TAIR10)
phytochrome D (PHYD); CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Phytochrome chromophore binding site (InterPro:IPR013516), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 26426 Blast hits to 26152 proteins in 3833 species: Archae - 221; Bacteria - 20797; Metazoa - 4; Fungi - 482; Plants - 3855; Viruses - 5; Other Eukaryotes - 1062 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1151-MONOMERBioGrid:12613eggNOG:COG4251eggNOG:ENOG410IJ3B
EMBL:AL161543EMBL:CP002687EMBL:X76609EMBL:Z97340
EnsemblPlants:AT4G16250EnsemblPlants:AT4G16250.1entrez:827319Gene3D:3.30.450.40
Gene3D:3.30.565.10GeneID:827319Genevisible:P42497GO:GO:0000155
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009584
GO:GO:0009585GO:GO:0009881GO:GO:0017006GO:GO:0018298
GO:GO:0042802Gramene:AT4G16250.1hmmpanther:PTHR24423hmmpanther:PTHR24423:SF563
HOGENOM:HOG000272703InParanoid:P42497IntAct:P42497InterPro:IPR000014
InterPro:IPR001294InterPro:IPR003018InterPro:IPR003594InterPro:IPR003661
InterPro:IPR005467InterPro:IPR012129InterPro:IPR013515InterPro:IPR013516
InterPro:IPR013654InterPro:IPR013767InterPro:IPR016132InterPro:IPR029016
iPTMnet:P42497KEGG:ath:AT4G16250KO:K12122OMA:INDIVEW
PaxDb:P42497Pfam:P42497Pfam:PF00360Pfam:PF00512
Pfam:PF00989Pfam:PF01590Pfam:PF02518Pfam:PF08446
Pfscan:PS50046Pfscan:PS50109Pfscan:PS50112PhylomeDB:P42497
PIR:B71429PIRSF:PIRSF000084PRIDE:P42497PRINTS:PR01033
PRO:PR:P42497PROSITE:PS00245PROSITE:PS50046PROSITE:PS50109
PROSITE:PS50112ProteinModelPortal:P42497Proteomes:UP000006548RefSeq:NP_193360.1
scanprosite:PS00245SMART:SM00065SMART:SM00091SMART:SM00387
SMART:SM00388SMR:P42497STRING:3702.AT4G16250.1SUPFAM:SSF55781
SUPFAM:SSF55785SUPFAM:SSF55874TAIR:AT4G16250tair10-symbols:PHYD
TIGRfam:TIGR00229TIGRFAMs:TIGR00229UniGene:At.33095UniProt:P42497
Coordinates (TAIR10) chr4:-:9195602..9199486
Molecular Weight (calculated) 129276.00 Da
IEP (calculated) 6.09
GRAVY (calculated) -0.14
Length 1164 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVSGGGSKTS GGEAASSGHR RSRHTSAAEQ AQSSANKALR SQNQQPQNHG GGTESTNKAI QQYTVDARLH AVFEQSGESG KSFDYSQSLK TAPYDSSVPE
0101: QQITAYLSRI QRGGYTQPFG CLIAVEESTF TIIGYSENAR EMLGLMSQSV PSIEDKSEVL TIGTDLRSLF KSSSYLLLER AFVAREITLL NPIWIHSNNT
0201: GKPFYAILHR VDVGILIDLE PARTEDPALS IAGAVQSQKL AVRAISHLQS LPSGDIKLLC DTVVESVRDL TGYDRVMVYK FHEDEHGEVV AESKRNDLEP
0301: YIGLHYPATD IPQASRFLFK QNRVRMIVDC YASPVRVVQD DRLTQFICLV GSTLRAPHGC HAQYMTNMGS IASLAMAVII NGNEEDGNGV NTGGRNSMRL
0401: WGLVVCHHTS ARCIPFPLRY ACEFLMQAFG LQLNMELQLA LQVSEKRVLR MQTLLCDMLL RDSPAGIVTQ RPSIMDLVKC NGAAFLYQGK YYPLGVTPTD
0501: SQINDIVEWL VANHSDSTGL STDSLGDAGY PRAAALGDAV CGMAVACITK RDFLFWFRSH TEKEIKWGGA KHHPEDKDDG QRMNPRSSFQ TFLEVVKSRC
0601: QPWETAEMDA IHSLQLILRD SFKESEAMDS KAAAAGAVQP HGDDMVQQGM QEIGAVAREM VRLIETATVP IFAVDIDGCI NGWNAKIAEL TGLSVEDAMG
0701: KSLVRELIYK EYKETVDRLL SCALKGDEGK NVEVKLKTFG SELQGKAMFV VVNACSSKDY LNNIVGVCFV GQDVTGHKIV MDKFINIQGD YKAIIHSPNP
0801: LIPPIFAADE NTCCLEWNTA MEKLTGWPRS EVIGKLLVRE VFGSYCRLKG PDALTKFMIV LHNAIGGQDT DKFPFPFFDR KGEFIQALLT LNKRVSIDGK
0901: IIGAFCFLQI PSPELQQALE VQRRQESEYF SRRKELAYIF QVIKNPLSGL RFTNSLLEDM DLNEDQKQLL ETSVSCEKQI SKIVGDMDVK SIDDGSFLLE
1001: RTEFFIGNVT NAVVSQVMLV VRERNLQLIR NIPTEVKSMA VYGDQIRLQQ VLAEFLLSIV RYAPMEGSVE LHLCPTLNQM ADGFSAVRLE FRMACAGEGV
1101: PPEKVQDMFH SSRWTSPEGL GLSVCRKILK LMNGGVQYIR EFERSYFLIV IELPVPLMMM MPSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)