AT5G08550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GC-rich sequence DNA-binding factor-like protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
increased level of polyploidy1-1D (ILP1); CONTAINS InterPro DOMAIN/s: GC-rich sequence DNA-binding factor-like (InterPro:IPR012890); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein (TAIR:AT5G09210.1); Has 786 Blast hits to 745 proteins in 186 species: Archae - 2; Bacteria - 46; Metazoa - 439; Fungi - 95; Plants - 69; Viruses - 1; Other Eukaryotes - 134 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2765981..2770282 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100781.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.27 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||
| Length | 908 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSNRPKNFR RRGDDGGDEI DGKVATPSSK PTSTLSSSKP KTLSASAPKK KLLSFADDEE EEEDGAPRVT IKPKNGRDRV KSSSRLGVSG SSHRHSSTKE 101: RRPASSNVLP QAGSYSKEAL LELQKNTRTL PYSRSSANAE PKVVLKGLIK PPQDHEQQSL KDVVKQVSDL DFDEEGEEEQ HEDAFADQAA IIRAKKERMR 201: QSRSAPAPDY ISLDGGIVNH SAVEGVSDED ADFQGIFVGP RPQKDDKKGV FDFGDENPTA KETTTSSIYE DEDEEDKLWE EEQFKKGIGK RMDEGSHRTV 301: TSNGIGVPLH SKQQTLPQQQ PQMYAYHAGT PMPNVSVAPT IGPATSVDTL PMSQQAELAK KALKDNVKKL KESHAKTLSS LTKTDENLTA SLMSITALES 401: SLSAAGDKYV FMQKLRDFIS VICDFMQNKG SLIEEIEDQM KELNEKHALS ILERRIADNN DEMIELGAAV KAAMTVLNKH GSSSSVIAAA TGAALAASTS 501: IRQQMNQPVK LDEFGRDENL QKRREVEQRA AARQKRRARF ENKRASAMEV DGPSLKIEGE SSTDESDTET SAYKETRDSL LQCADKVFSD ASEEYSQLSK 601: VKARFERWKR DYSSTYRDAY MSLTVPSIFS PYVRLELLKW DPLHQDVDFF DMKWHGLLFD YGKPEDGDDF APDDTDANLV PELVEKVAIP ILHHQIVRCW 701: DILSTRETRN AVAATSLVTN YVSASSEALA ELFAAIRARL VEAIAAISVP TWDPLVLKAV PNTPQVAAYR FGTSVRLMRN ICMWKDILAL PVLENLALSD 801: LLFGKVLPHV RSIASNIHDA VTRTERIVAS LSGVWTGPSV TRTHSRPLQP LVDCTLTLRR ILEKRLGSGL DDAETTGLAR RLKRILVELH EHDHAREIVR 901: TFNLKEAV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)