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AT2G18760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chromatin remodeling 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
chromatin remodeling 8 (CHR8); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA repair, response to gamma radiation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 24 (TAIR:AT5G63950.1); Has 17230 Blast hits to 14463 proteins in 1653 species: Archae - 99; Bacteria - 4180; Metazoa - 3846; Fungi - 4219; Plants - 1677; Viruses - 118; Other Eukaryotes - 3091 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-991-MONOMERBioGrid:1748EC:3.6.4.-eggNOG:ENOG410XP4Z
eggNOG:KOG0387EMBL:AC005724EMBL:CP002685EnsemblPlants:AT2G18760
EnsemblPlants:AT2G18760.1entrez:816391Gene3D:3.40.50.300GeneID:816391
Genevisible:Q9ZV43GO:GO:0003677GO:GO:0004386GO:GO:0005524
GO:GO:0005634GO:GO:0006281GO:GO:0006351GO:GO:0006355
GO:GO:0006974GO:GO:0010332Gramene:AT2G18760.1hmmpanther:PTHR10799
hmmpanther:PTHR10799:SF624HOGENOM:HOG000170952InParanoid:Q9ZV43InterPro:IPR000330
InterPro:IPR001650InterPro:IPR014001InterPro:IPR027417iPTMnet:Q9ZV43
KEGG:ath:AT2G18760KO:K10841ncoils:CoilOMA:ENFLTAC
PaxDb:Q9ZV43Pfam:PF00176Pfam:PF00271Pfam:Q9ZV43
Pfscan:PS51192Pfscan:PS51194PhylomeDB:Q9ZV43PIR:C84568
PRIDE:Q9ZV43PRO:PR:Q9ZV43PROSITE:PS51192PROSITE:PS51194
ProteinModelPortal:Q9ZV43Proteomes:UP000006548Reactome:R-ATH-6781823Reactome:R-ATH-6782135
Reactome:R-ATH-6782210RefSeq:NP_179466.1SMART:SM00487SMART:SM00490
SMR:Q9ZV43STRING:3702.AT2G18760.1SUPFAM:SSF52540TAIR:AT2G18760
tair10-symbols:CHR8UniGene:At.39947UniProt:Q9ZV43
Coordinates (TAIR10) chr2:+:8129154..8133502
Molecular Weight (calculated) 133600.00 Da
IEP (calculated) 7.20
GRAVY (calculated) -0.65
Length 1187 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)