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AT2G40770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 20880 Blast hits to 12947 proteins in 1504 species: Archae - 88; Bacteria - 5732; Metazoa - 4955; Fungi - 5171; Plants - 2134; Viruses - 115; Other Eukaryotes - 2685 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0553eggNOG:KOG0298EMBL:CP002685EnsemblPlants:AT2G40770
EnsemblPlants:AT2G40770.1entrez:818674Gene3D:3.30.40.10Gene3D:3.40.50.300
GeneID:818674GO:GO:0004386GO:GO:0005524GO:GO:0008270
Gramene:AT2G40770.1hmmpanther:PTHR10799hmmpanther:PTHR10799:SF695InParanoid:F4II36
InterPro:IPR000330InterPro:IPR001650InterPro:IPR001841InterPro:IPR001965
InterPro:IPR011011InterPro:IPR013026InterPro:IPR013083InterPro:IPR014001
InterPro:IPR019786InterPro:IPR027417iPTMnet:F4II36KEGG:ath:AT2G40770
KO:K15710OMA:QRRKYELPaxDb:F4II36Pfam:PF00176
Pfam:PF00271Pfscan:PS50089Pfscan:PS50293Pfscan:PS51194
PRIDE:F4II36PROSITE:PS01359PROSITE:PS50089PROSITE:PS50293
PROSITE:PS51194ProteinModelPortal:F4II36Proteomes:UP000006548RefSeq:NP_181609.4
scanprosite:PS01359SMART:SM00184SMART:SM00249SMART:SM00487
SMART:SM00490STRING:3702.AT2G40770.1SUPFAM:SSF52540SUPFAM:SSF57850
SUPFAM:SSF57903TAIR:AT2G40770UniGene:At.25019UniGene:At.27873
UniProt:F4II36
Coordinates (TAIR10) chr2:-:17013535..17021315
Molecular Weight (calculated) 188083.00 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.49
Length 1664 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGRRKQSKPQ RAVGLITPTG SESDRNQLPG DEAEGSGDKN VEDIDKPYYV NICLSSRVSE QQQNFDLAEV VLTNFSVRER VGSSSTFTKP IEVDHDLDCS
0101: LRFRLCNVTN FVDRIKLGHW PVLSSSDITL ELVDNKVSDD EVGSVIWSAS FDGPGEGVSG LAHLASIKFL TLRLMPGNEG LLSPRVRVEM LQQAFDACDS
0201: LLENTRQIWK KSMIHVMSWL RPEVMTSEAR YGTRFNVKDI ESSVVTEDET LDSSKQSSFD AAAFYEAIKP SKTDAMLGDD IADLLPELRP YQRRAAYWMV
0301: QRERGDPITL GDKEDNQFIS PLSISVGFLD SATKMFLNPF SGNISLTPEY FSPRIQGGIL ADEMGLGKTV ELLACIFSHR KPAEDEISVS NGSSVTDVLN
0401: AGLRRLKRER VECICGAVSE SHKYKGVWVQ CDLCDAWQHA DCVGYSPKGK GKKDSQHIDE KASQKKSKKD ATEIIVREGE YICQMCSELL QVTASPISTG
0501: ATLIVCPAPI LPQWHSEITR HTRLGSLITC IYEGVRNASL SEEPMIDITE LLNADIVLTT YDVLKEDLTH DFDRHDGDRH CLRFQKRYPV IPTPLTRIFW
0601: WRICLDEAQM VESNAAAATE MALRLYTKHR WCITGTPIQR KLDDLFGLLK FLKANPFDVS RWWIEVIRDP YERRDTKAME FTHKFFKQVM WRSSKVHVAD
0701: ELQLPPQEEC VSWLKFSAIE EHFYSRQHDT CVSYAREVIE TLKRDILKRG HTSSDNPLVT HAEAAKLLNS LLKLRQACCH PQVGSSGLRS LQQSPMTMEE
0801: ILMVLVKKTQ SEGEEALRVL IVALNGIAAI AMLKQEFSEA VSLYKEALSI TEEHAEDFRL DPLLNIHILH NLAEILPMAK SYGGKLSASG RPETKIDVKD
0901: DDHHRASKRQ RINELESLTH DSSETVHQRE AIAPDNGLKK DGECHEECKT LDIVCDTLKV KYLSAFNSKL SAAQHEFKKS YNQVSESLSN MGKQRSVWWL
1001: DALQLTEQNK DFSSELTRKI EEALHGNLNN SSSSRESSRF RTIHGMKLHL QTCMDMLERS RKKVIDRILE IDQTMEKPKL EDIERISNCK YCNKNSDGPP
1101: CIHCELDELF QEYEARLFRL NKSRRGVMEI AAAEETVHLQ KKRDARNLFL FGLSSRSKDL NASRGDDEEP TKRNAGDIVV LSKSPSETEI VLGVIRNHCK
1201: THLDRESKLA ATKHLHTLEV MRKEYVHARV LARDQAQLLR AYDEINMSTM RLQLRESEDD TSIYALGRDE LDVASVLNTN DKFMAQSSLL SIKGKLRYLK
1301: GLMKSKQKQE SESPDLSSPI HETVDASDPA EQESENLLKR DEACPICHEI LRNQKMVFQC GHSTCCNCFF AMTERKSVQE TLQKWVMCPI CRQHTDVRNI
1401: AYADDRRNSS SSDQDHKDSE ASLVVQGSYG TKIEAVTRRI LWIKSSDPQT KVLVFSSWND VLDVLEHAFA ANSITCIRMK GGRKSQTAIS KFKGSEKETQ
1501: KTNSHQKEEK SIQVLLLLVQ HGANGLNLLE AQHVILVEPL LNPAAEAQAV GRVHRIGQEK PTLVHRFLVS GTVEESIYKL NRNKNTNLSS FSSRNTKNQD
1601: QQFLTLKDLE SLFASPTAET AEMEQNPGER QENLRDLPPS VAAALAAERR MKESNASSST TNAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)