AT3G23900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA recognition motif (RRM)-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Filamin/ABP280 repeat (InterPro:IPR001298), Immunoglobulin E-set (InterPro:IPR014756), Filamin/ABP280 repeat-like (InterPro:IPR017868), RNA recognition motif, RNP-1 (InterPro:IPR000504), Immunoglobulin-like fold (InterPro:IPR013783), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.1); Has 108738 Blast hits to 50207 proteins in 2086 species: Archae - 86; Bacteria - 8977; Metazoa - 55837; Fungi - 11723; Plants - 7259; Viruses - 753; Other Eukaryotes - 24103 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8631941..8635852 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108799.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.77 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 987 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASDRGSAAS GGKPIWMKHA EDAKIKDEGE KDAAAKAAFE ATFKGVDQTT HLIEPVAPVP ESAPESDSDS DDDDDDESDY LSRKPIGPVD PSKSTASGAG 101: IGGGTACVPS TFVVVTKDSD GRKVPNGGAL IRVKVSPGVG VGGTDQEGVV KDVGDGSYAV TYVVPKRGNY MVNIECNGNA IMGSPFPVFF SQGSSSTGLM 201: GSAPASYSNL INQTMPNMPN YTGSVSGAFP GLLGMVPGIA SGPSGGAILP GVGASLGEVC REYLNGRCVN SMCKLNHPPQ NLLMTAIAAT TSMGNLSQVP 301: MAPSAAAMAA AQAIVAAQAL QAHASQMQAQ AQSNKGSLGS PEKGENGDLK KFLQVSNLSP SLTTEQLRQL FSFCGTVVDC SITDSKHIAY IEYSNSEEAT 401: AALALNNTEV FGRALNVEIA KSLPHKPSSN NSSSSLPLMM QQAVAMQQMQ FQQAILMQQA VATQQAANRA ATMKSATELA AARAAEISRK LRPDGVGNDE 501: KEADQKSRSP SKSPARSRSK SKSPISYRRR RRSPTYSPPF RRPRSHRSRS PLRYQRRSTY EGRRRSYRDS RDISESRRYG RSDEHHSSSS RRSRSVSPKK 601: RKSGQEDSEL SRLRRDSSSR GEKKSSRAGS RSPRRRKEVK STPRDDEENK VKRRTRSRSR SVEDSADIKD KSRDEELKHH KKRSRSRSRE DRSKTRDTSR 701: NSDEAKQKHR QRSRSRSLEN DNGSHENVDV AQDNDLNSRH SKRRSKSLDE DYDMKERRGR SRSRSLETKN RSSRKNKLDE DRNTGSRRRR SRSKSVEGKR 801: SYNKETRSRD KKSKRRSGRR SRSPSSEGKQ GRDIRSSPGY SDEKKSRHKR HSRSRSIEKK NSSRDKRSKR HERLRSSSPG RDKRRGDRSL SPVSSEDHKI 901: KKRHSGSKSV KEKPHSDYEK VDDGDANSDS SQQERNLEGH LLSLDSMSSQ DVEKSKENPP SSSSVERGDA NDDEKFKIEE KRIILKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)