AT2G41520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Heat shock protein DnaJ with tetratricopeptide repeat | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Heat shock protein DnaJ with tetratricopeptide repeat; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ with tetratricopeptide repeat (TAIR:AT5G12430.1); Has 24543 Blast hits to 21405 proteins in 3009 species: Archae - 131; Bacteria - 8314; Metazoa - 5854; Fungi - 2610; Plants - 2808; Viruses - 9; Other Eukaryotes - 4817 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17317662..17322705 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 122790.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1108 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSPAAVEIGS PVEKVSSVLN PMENFSAFFP ESVHSHDQRT MGSSFSFGFG AGSGQTTKTR HKPRLVKLRK NGREVKKPSF SGEILSGFNP FAPPGKGSLH 0101: MNSGNDRDAG QSPGDKCFVF GASGNSSGAK SSPGNATIAS LSDEEEFSTP IGDSELDSES IKEHSNGVRG KVDNDRENIR PCSESTIFDA TNGFRFDGGV 0201: NGSWKSVENP DAVKEFFRRQ NGMDKASASK SCSKSNSVQY AHGKNRDDPE LNLLADMEKL NISDSRVHGG SDYEEASKSN KTPVFTFSSF GKVDPICKEG 0301: AATSEPYSFS SNGFQQSNNA SGENPTFHSQ TTYGNNLTNT SFATKTFFDD FKVPEWDPSL LKDSLFPEVD RNPVHARSNR SSKDKRSKKV KEKMKQGEPD 0401: RCNGQTAEGI EAQEKLNSPG YCSPMDYSPY QGDKTSNQFP TETPLAPSHS REHIDSRSSN DFKVASARDS SLFTAEDHGS TCIPNFSFSA STSQETIRHK 0501: KLQAVKKYRR KVNNSLPKSN LNATMRNNQE NQPVNTGQAK QDSGSTSMMP DVCEVWRLRG NQAYKNGYMS KAEECYTHGI NSSPSKDNSE YSVKPLALCY 0601: GNRAAARISL GRLREAISDC EMAASLDPSY IKAYMRAANC HLVLGELGSA VQYFNKCMKS TSSVCLDRRT TIEAAEGLQQ AQRVADFTSC ASIFLEKRTP 0701: DGASDALVPI ANALSISSCS DKLLQMKAEA LFMIRRYKEV IELCENTLQT AERNFVSAGI GGTTNVNGLG STYHSLIVWR WNKISKSHFY LGNLEKALDI 0801: LEKLQQVEYT CNENQEECRE SPASLVATIS ELLRYKNAGN EAVRDRKYME AVEQYTAALS RNVDSRPFAA ICFCNRAAAN QALVQIADAI ADCSLAMALD 0901: ENYTKAVSRR ATLHEMIRDY DQAASDLQRL ISILVKQSDK TKTPETSVDR ASSRKELKQA RQRLSVMEEK SKEGIHLDFF LIMGVKTSDS AADIKKAYRK 1001: AALRHHPDKA AQILVRSESE GPWLKEILEE VHKGADRLFK MIGEAYSVLS DPTKRSDYEL EEEIRKARAS RESYRSRKAA EASSPPYQTS RRYWKDSWRT 1101: NQNTPSWW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)