AT5G27610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DIRP ;Myb-like DNA-binding domain | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ALWAYS EARLY 1 (ALY1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP ;Myb-like DNA-binding domain (TAIR:AT3G05380.4); Has 727 Blast hits to 616 proteins in 109 species: Archae - 0; Bacteria - 13; Metazoa - 449; Fungi - 28; Plants - 134; Viruses - 1; Other Eukaryotes - 102 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:9764852..9769706 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109093.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 971 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPTRKSKSV NKRFTNEASP DINFGSASKT KQRKKKLADK LGPQWTKREL VRFYDAYRKY VGDWKKVAAA VRNNRSVEMV ETLFCMNRAY LSLPEGTASV 101: AGLIAMMTDH YSVMEGSESE GEDHDASEVT RKHLKRKRPQ VLPSDFREEV VPPHSVASVE GCLSFLKQTQ AYEKRQRATG KRTPRFLVAI THERDDIEDF 201: SPPNKRAKKQ LDADDDASRR GGGSPYRRKE LSEITPTRLR KTSQAQEAQF KHPDSSMFEN GVRDRWHKKG AADRDGALLM DMEGLVTQKE KIVRVEEAEG 301: NYSDDDDGLG ALKTLAEMSA SLAPAGLLES ESSPHWEEER KTNNVDKKSN TLETVSTSHH REKAKQAGLE DNLLHAISAP DKRKPKSVPE SVDGNVVSIE 401: ELRTSSRKRK PKFQVLDVVA PKESTQDKSL YTKESAEVDS LKTPVKARRS SQGPAKQLKT AKTTVESSSA SDKKITGPDA VVPATQVSAS GPETLPQKPP 501: NRRKISLKKS LQERAKSLET THDKPRSFKK LSEHELLQEK LSNCLSYPLV RRWCIYEWFY SAIDYPWFAK MEFTDYLNHV GLGHAPRLTR VEWSVIKSSL 601: GRPRRLSQRF LQDERDKLQE YRESVRKHYT ELRGCATGVL HTDLARPLSV GNRVIAIHPK TREIRDGKIL TVDHNKCNVL FDELGVELVM DIDCMPLNPL 701: EYMPEGLRRQ IDKCLAICKE ARLNRHPSSD ASVLFSPSVL ENVNFSMNPP PAKQDDIREP VLYGKVIATN TTDQSIVINS KVTGTEIQRT LALQHTSDAQ 801: EMEPEMIEIV IESKSIAQAM VDAAIKAASS GKNNEDSENM VHQALSSIGE HQPLDNSIVP GIKHQEYTNG SLDHHSLNTA EPMSNGFISQ EGSGKNKTPM 901: PSELITSCVA SWLMMQMISK KQYPPADVAQ LMDTVVNDLQ PRCPQNMPIY REIQTCMGLI KTQIMALVRT S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)