suba logo
AT2G06510.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : replication protein A 1A
Curator
Summary (TAIR10)
Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I.
Computational
Description (TAIR10)
replication protein A 1A (RPA1A); FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT4G19130.1); Has 932 Blast hits to 912 proteins in 229 species: Archae - 16; Bacteria - 0; Metazoa - 191; Fungi - 147; Plants - 421; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Protein Annotations
BioGrid:604eggNOG:COG1599eggNOG:KOG0851EMBL:AC006420
EMBL:AK118699EMBL:BT005946EMBL:CP002685EnsemblPlants:AT2G06510
EnsemblPlants:AT2G06510.1entrez:815209ExpressionAtlas:Q9SKI4Gene3D:2.40.50.140
GeneID:815209Genevisible:Q9SKI4GO:GO:0000790GO:GO:0003677
GO:GO:0006260GO:GO:0006281GO:GO:0007131GO:GO:0007141
GO:GO:0009555GO:GO:0046872GO:GO:0048232GO:GO:0051026
hmmpanther:PTHR23273hmmpanther:PTHR23273:SF15HOGENOM:HOG000162322InParanoid:Q9SKI4
IntAct:Q9SKI4InterPro:IPR004365InterPro:IPR004591InterPro:IPR007199
InterPro:IPR012340InterPro:IPR013955InterPro:IPR031657iPTMnet:Q9SKI4
KEGG:ath:AT2G06510KO:K07466OMA:NDVGPRRPaxDb:Q9SKI4
Pfam:PF01336Pfam:PF04057Pfam:PF08646Pfam:PF16900
Pfam:Q9SKI4PhylomeDB:Q9SKI4PIR:B84478PRIDE:Q9SKI4
PRO:PR:Q9SKI4ProteinModelPortal:Q9SKI4Proteomes:UP000006548RefSeq:NP_178690.1
SMR:Q9SKI4STRING:3702.AT2G06510.1SUPFAM:SSF50249TAIR:AT2G06510
tair10-symbols:ATRPA1Atair10-symbols:ATRPA70Atair10-symbols:RPA1Atair10-symbols:RPA70A
TIGRfam:TIGR00617TIGRFAMs:TIGR00617UniGene:At.22213UniGene:At.71077
UniProt:Q9SKI4
Coordinates (TAIR10) chr2:+:2585215..2587601
Molecular Weight (calculated) 72247.20 Da
IEP (calculated) 7.45
GRAVY (calculated) -0.47
Length 640 amino acids
Sequence (TAIR10)
(BLAST)
001: MPVSLTPNAI TAIHDGDVNL KPLLQVLEIK MIGRSQERSQ ERYRFLISDG VSAQHAMVAV QLNDRVKSGQ FEKGSIVQLI DYICSDVKGR KLIVVLNMET
101: IVQQSETIGN PTIFGETDTE AQKTFSGTGN IPPPNRVVFN EPMVQHSVNR APPRGVNIQN QANNTPSFRP SVQPSYQPPA SYRNHGPIMK NEAPARVIPI
201: AALNPYQGRW AIKARVTAKG DIRRYNNAKG DGKVFSFDLL DYDGGEIRVT CFNALVDRFY DVTEVGKVYL ISKGSLKPAQ KNFNHLKNEW EIFLESTSTV
301: ELCPDEDGSI PKQQFSFRPI SDIENAENNT ILDVIGVVTS VNPSVPILRK NGMETHRRIL NLKDESGKAV EVTLWGEFCN RDGRQLEEMV DSAFHPVLAI
401: KAGKVSDFSG KSVGTISSTQ LFINPDFPEA HKLRTWFDYG GKDTASFSIS RDTMPGGVSR NEIRKNVSQI KEEGLGRSDK PDWITVKATI SFIKTDSFCY
501: TACPLMIGDK QCNKKVTRSG TNRWLCDRCN QESDECDYRY LLQVQIQDHT GLTWITAFQE TGEEIMGCPA KKLYAMKYEL EKEEEFAEIV RDRLFHQYML
601: KLKIKEESYG DEQRVKMTVV KVDKVNYTSE SKYMLDLLVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)