AT2G06510.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : replication protein A 1A | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
replication protein A 1A (RPA1A); FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT4G19130.1); Has 932 Blast hits to 912 proteins in 229 species: Archae - 16; Bacteria - 0; Metazoa - 191; Fungi - 147; Plants - 421; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:2585215..2587601 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 72247.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 640 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MPVSLTPNAI TAIHDGDVNL KPLLQVLEIK MIGRSQERSQ ERYRFLISDG VSAQHAMVAV QLNDRVKSGQ FEKGSIVQLI DYICSDVKGR KLIVVLNMET 101: IVQQSETIGN PTIFGETDTE AQKTFSGTGN IPPPNRVVFN EPMVQHSVNR APPRGVNIQN QANNTPSFRP SVQPSYQPPA SYRNHGPIMK NEAPARVIPI 201: AALNPYQGRW AIKARVTAKG DIRRYNNAKG DGKVFSFDLL DYDGGEIRVT CFNALVDRFY DVTEVGKVYL ISKGSLKPAQ KNFNHLKNEW EIFLESTSTV 301: ELCPDEDGSI PKQQFSFRPI SDIENAENNT ILDVIGVVTS VNPSVPILRK NGMETHRRIL NLKDESGKAV EVTLWGEFCN RDGRQLEEMV DSAFHPVLAI 401: KAGKVSDFSG KSVGTISSTQ LFINPDFPEA HKLRTWFDYG GKDTASFSIS RDTMPGGVSR NEIRKNVSQI KEEGLGRSDK PDWITVKATI SFIKTDSFCY 501: TACPLMIGDK QCNKKVTRSG TNRWLCDRCN QESDECDYRY LLQVQIQDHT GLTWITAFQE TGEEIMGCPA KKLYAMKYEL EKEEEFAEIV RDRLFHQYML 601: KLKIKEESYG DEQRVKMTVV KVDKVNYTSE SKYMLDLLVR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)