suba logo
AT4G20400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : JUMONJI 14
Curator
Summary (TAIR10)
Encodes a histone H3K4 demethylase repressing floral transition.
Computational
Description (TAIR10)
JUMONJI 14 (JMJ14); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, histone demethylase activity (H3-K4 specific); INVOLVED IN: photoperiodism, flowering, negative regulation of flower development, histone H3-K4 demethylation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2); Has 2123 Blast hits to 1591 proteins in 195 species: Archae - 0; Bacteria - 1; Metazoa - 1105; Fungi - 471; Plants - 374; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).
Protein Annotations
BioGrid:13079EC:1.14.11.-eggNOG:ENOG410XR9JeggNOG:KOG1246
EMBL:AL080253EMBL:AL161553EMBL:BT002486EMBL:BT010548
EMBL:CP002687EnsemblPlants:AT4G20400EnsemblPlants:AT4G20400.1entrez:827788
GeneID:827788Genevisible:Q8GUI6GO:GO:0000976GO:GO:0003700
GO:GO:0005654GO:GO:0006351GO:GO:0006355GO:GO:0009910
GO:GO:0010216GO:GO:0032453GO:GO:0034720GO:GO:0045892
GO:GO:0046872GO:GO:0048573GO:GO:0048579GO:GO:0051213
hmmpanther:PTHR10694hmmpanther:PTHR10694:SF41HOGENOM:HOG000241335InParanoid:Q8GUI6
IntAct:Q8GUI6InterPro:IPR003347InterPro:IPR003349InterPro:IPR003888
InterPro:IPR003889InterPro:IPR004198iPTMnet:Q8GUI6KEGG:ath:AT4G20400
KO:K11446OMA:CGETRNTPaxDb:Q8GUI6Pfam:PF02373
Pfam:PF02375Pfam:PF02928Pfam:PF05964Pfam:PF05965
Pfam:Q8GUI6Pfscan:PS51183Pfscan:PS51184Pfscan:PS51542
Pfscan:PS51543PhylomeDB:Q8GUI6PIR:T10582PRIDE:Q8GUI6
PRO:PR:Q8GUI6PROSITE:PS51183PROSITE:PS51184PROSITE:PS51542
PROSITE:PS51543ProteinModelPortal:Q8GUI6Proteomes:UP000006548RefSeq:NP_001031681.1
RefSeq:NP_193773.2SMART:SM00541SMART:SM00542SMART:SM00545
SMART:SM00558SMR:Q8GUI6STRING:3702.AT4G20400.1SUPFAM:SSF51197
TAIR:AT4G20400tair10-symbols:JMJ14tair10-symbols:PKDM7BUniGene:At.43482
UniProt:Q8GUI6
Coordinates (TAIR10) chr4:+:11009004..11013588
Molecular Weight (calculated) 108161.00 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.60
Length 954 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQLASLAES VAMEEDSEKQ SIKGESSLEP DSTPSSPKIT ARWNPSEACR PLVDDAPIFY PTNEDFDDPL GYIEKLRSKA ESYGICRIVP PVAWRPPCPL
101: KEKKIWENSK FPTRIQFIDL LQNREPIKKS TKTKKRKRRR ISKIGYTRRK RDSGCDTASS GSSDSEGKFG FQTGPDFTLE EFQKYDEYFK ECYFQSEDHP
201: GSKASENKKF KPKVKDLEGE YWRIVEQATD EVEVYYGADL ETKKFGSGFP KYKPGYPISE ADQYSQCGWN LNNLSRLPGS VLAFESCDIS GVIVPWLYVG
301: MCFSTFCWHV EDHHLYSMNY LHTGDPKVWY GIPGNHAESF ENVMKKRLPD LFEEQPDLLH QLVTQLSPRI LKEEGVPVYR AVQRSGEFIL TFPKAYHSGF
401: NCGFNCAEAV NVAPVDWLVH GQNAVEGYSK QRRKSSLSHD KLLLGAAMEA TYCLWELSLS KKKTPVIARW KRVCSEDGLL TKAVKKRVQM EEERLNHLQD
501: GFSLRKMEGD FDNKRERECF LCFYDLHMSA SSCKCSPNRF ACLIHAKDLC SCESKDRYIL IRHTLDELWA LVRALEGDLD AIDLWASKCR DQYPSQHPRA
601: REYAYLKSAP CIKSRGSSKV QQREQNNLQL VSERLQSDLT SNKEVQLKQD GDSDVNRHGH ESERNHVHGI TDKSAVTDVK LGVGGKFDEK KISVESQNPH
701: SVSDVGCSEL AKKVDGCLGG KDQNAATNRL SLSVELLSSG SLVVKKLWCS KQAIYPKGFK SRVKFLSVLD PTNLTNYISE VLDAGLLGPL FRVSVEDYPT
801: ENFSNVSAEK CWQMVTQRLK LEIIKKCDQP VSSLTSLQPL ESINGLEMFG FLSPHVIKVV EALDPKHQLE EYWNQKAVKL FGAEPIKEGE KDDTEKGGAS
901: DPSLDRDTRL LRGLLKKATP EELVMMHGLL CGETRNTELK EELSTLVDKM EISP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)