AT3G03970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G54385.2); Has 89 Blast hits to 89 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1028144..1029891 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61445.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||
| Length | 554 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRNLGSAFR QELANLDKDP DSHKTAMSNL RSIVKDLDAK VVHVFVAQLS DVKEIGLESG GYTVSLFEDL ARAHGVKIAP HIDIIMPAII RTLSSSEGSL 101: RVQQACSRAV AAMARYGIDP TTPEDKKTNV IHSLCKPLSD SLIDSQHQQH LALGSALCLK SLVDCDNWRS ASSEMVNNVC QSLAVALEAT SSEAKSHMAL 201: VMALSKHNPF TVEAYARLFV KSGLRILDLG VVEGDSQKRL LAIQMLNFLM KNLNPKSISS ELELIYQEME KYQKDQHYVK MAAHETMRQA ERLICEADPM 301: FDAENCKPRN SLSGSVKSTS SLREHDGSVY SRQDRSYVND QDEYDVLFSG VASGRTLVSG SPLVTFGDNN QETGFVIESP RIGDQIQCSG VENGNIESVW 401: FHQRNRSSEF NESVCSRTNR SRSSRRNTKK RQSGDICSKH HRHGFAQDPF TELLDNRQQL LQYSETSSSS SIYDTSGTTT PTNTTEDICE KPKTDLDSEA 501: KLKTVETELD PRLGRSKGVL KLGLSVFSIA VAGFASFMWM YLQDDMMPPH LVPT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)