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AT4G17895.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 20
Curator
Summary (TAIR10)
Encodes a ubiquitin-specific protease.
Computational
Description (TAIR10)
ubiquitin-specific protease 20 (UBP20); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 21 (TAIR:AT5G46740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G17895-MONOMERBioGrid:12806EC:3.4.19.12eggNOG:ENOG410XQ92
eggNOG:KOG0706eggNOG:KOG1865EMBL:AF302668EMBL:AL021889
EMBL:AL161547EMBL:CP002687EnsemblPlants:AT4G17895EnsemblPlants:AT4G17895.1
entrez:827513GeneID:827513Genevisible:Q9FPS7GO:GO:0006511
GO:GO:0016579GO:GO:0036459Gramene:AT4G17895.1hmmpanther:PTHR24006
hmmpanther:PTHR24006:SF451HOGENOM:HOG000154757InParanoid:Q9FPS7InterPro:IPR001394
InterPro:IPR018200InterPro:IPR028889KEGG:ath:AT4G17895KO:K11855
MEROPS:C19.A16OMA:WNLGNSCPaxDb:Q9FPS7Pfam:PF00443
Pfam:Q9FPS7Pfscan:PS50235PhylomeDB:Q9FPS7PIR:T05075
PRIDE:Q9FPS7PRO:PR:Q9FPS7PROSITE:PS00972PROSITE:PS00973
PROSITE:PS50235ProteinModelPortal:Q9FPS7Proteomes:UP000006548RefSeq:NP_567544.1
scanprosite:PS00972scanprosite:PS00973SMR:Q9FPS7STRING:3702.AT4G17895.1
SUPFAM:SSF54001TAIR:AT4G17895tair10-symbols:UBP20UniGene:At.21461
UniProt:Q9FPS7
Coordinates (TAIR10) chr4:+:9939914..9942698
Molecular Weight (calculated) 78636.80 Da
IEP (calculated) 4.21
GRAVY (calculated) -0.61
Length 695 amino acids
Sequence (TAIR10)
(BLAST)
001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)