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AT1G11060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.753
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WAPL (Wings apart-like protein regulation of heterochromatin) protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
WAPL (Wings apart-like protein regulation of heterochromatin) protein; BEST Arabidopsis thaliana protein match is: WAPL (Wings apart-like protein regulation of heterochromatin) protein (TAIR:AT1G61030.1); Has 319 Blast hits to 253 proteins in 105 species: Archae - 2; Bacteria - 73; Metazoa - 168; Fungi - 7; Plants - 48; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSDSeggNOG:KOG2152EMBL:CP002684EnsemblPlants:AT1G11060
EnsemblPlants:AT1G11060.1entrez:837647GeneID:837647GO:GO:0000070
GO:GO:0000212GO:GO:0009793GO:GO:0010789GO:GO:0045132
Gramene:AT1G11060.1hmmpanther:PTHR22100hmmpanther:PTHR22100:SF13InParanoid:F4I7C7
InterPro:IPR016024InterPro:IPR022771iPTMnet:F4I7C7KEGG:ath:AT1G11060
OMA:VERDEINPaxDb:F4I7C7Pfam:PF07814PRIDE:F4I7C7
ProteinModelPortal:F4I7C7Proteomes:UP000006548RefSeq:NP_172573.2SMR:F4I7C7
STRING:3702.AT1G11060.1SUPFAM:SSF48371TAIR:AT1G11060UniGene:At.16753
UniProt:F4I7C7
Coordinates (TAIR10) chr1:+:3684568..3689537
Molecular Weight (calculated) 103639.00 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.31
Length 930 amino acids
Sequence (TAIR10)
(BLAST)
001: MIIVKLTANR ICCSLLQLRR SYEHFYIFVF LPEIPLFRFS HLKLFPKNLQ IQRLVSAMME RTYGRRKPGI PRTLSDSLND SVSQTEYLSS SSSPDIEPID
101: YSLLPFSSQE SSSLWHSSSR SNFREDYPQN GGVVRRAKRV RNGAEAAAFT STLLEAQEFG ELMEHEDEVN FALDGLRKGH QLRIRRASLS SLLSICASQH
201: QRRSLRAQGI SQSIIDAILV LSLDDIPSNL AAATLFFALT ADGQDEHFME SPKCIKFLIK LLKPVIVTST EGKPRNIGFK LLSLLKDVDA ARDPVKMDDP
301: SSSDILSRVQ ELLVNCKEMR LNDSYITETT RPELSTKWVA LLAMERACVS KISFDDTSGS VKKTGGNFKE KLRELGGLDA VLEVVMDCHA VMERWVEYDA
401: LSVQEKKDNL HKQSLMLLLK CLKIMENATF LSTDNQNHLL GFKKCLGSHD SRMSFTELTI SVIKMLSGLH LRGGFSSPNT NNVNSHYSNG GNHDSVLEAN
501: RKVTNEVVTI SSDTYSTVGS ISTRNGSVSQ RSQSIIHLDF SPTSMSGSQS SVSGNEPTTS KTRVGSTISG SFAGRLASLG SDIARTTLRT TQAGEPICKK
601: FGEFAPPEES EDPFAFDLED YKPSKWAVVS VNQKKSRAQK KKGCYKQSKD ESLYQLFSSQ EESSNHRLNS QEESSNRDCS TSLQPSHCTN DIDEECLCLL
701: FDCLLTAVKV LMNLTNDNVV GCRQVGGCRG LESMAELIAR HFPSFTRSQL FSEMEKTGSS HQKKDKYLTD QELDFLVAIL GLLVNLVERD GVNRSRLASA
801: SVPITKPEEL QESEQEMIPL LCSIFLTNQG SAETKEETTT FTLDDEEAVL EGEKEAEKMI VEAYSALLLA FLSTESRSIR NSIKDYLPKR NLAILVPVLE
901: RFVAFHMTLN MIPPETHKAV MGVIESCKSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)