AT2G47820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1); Has 628 Blast hits to 543 proteins in 149 species: Archae - 0; Bacteria - 106; Metazoa - 145; Fungi - 69; Plants - 97; Viruses - 10; Other Eukaryotes - 201 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19588122..19590629 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90868.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.96 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||||||
| Length | 805 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPIHSDDME EAFVDESSML LNSPYLNGIH GDPDVLPRVG DQYQADLPVL LTESDRLKLI TCFHSEPPLQ KLLTFGLPIP LMWTRSEKFR GFREADIDKA 101: SPPVDDQSLQ NAACMKPRSI VLALPCQKNA KFKFDWLDKT LYPFPGTLGQ PWEDAEQERF LLGLYCLGKN LVLVQRFVGS KHMGDMLSYY YGSFYRSTEY 201: RRWVDGRKSR SRRSVQGQKL LSGWRQQELL SRISSHVSEE CKITLLKVSK AFREDKIALE DYVFTLKNTV GIDMLTQVIG IGKGKRDLTN CALEPTKLNH 301: GASGNSQVRI RNDLPIADIV KFLTGEYRMS KTRSSDLFWE AVWPRLLARG WHSEQPKDGP KNSLVFLVPE ANKFSRRKMS KGNHYFDSLT DVLNKVALDP 401: TLLELDEDLE RKGSKEEVIK NDPPTNLEEF DDSSPNSKKK KKYLQPRSKT RKIQEVMLFT IIDTSETNSI EGCTLKELRS LPVGTGSSIA NSSSYLSESE 501: DNMSEESENK AETTAKSMAS RVCGGGSISS GKSSSVNMDN ATSPSTISLN ERQQKNRKGG RPRNPKLLPV CTKRSSLADC TLREAGCFGE TQSRKKKPLK 601: KGKHMRPNPL KADLNVVLTR EERINEDKTL KLSSTSSFAR DSSCRRNIDR EISPERSESR EDFDLNVSQI SLEREADGTD TVMADVVQNS ESSCAEQSSV 701: QVDVEKQCKP QELQVTADLL PERRQSTRTR PLTTKALEAF AFGYLGNSNK ERKASEESRT KSNKKRKASE ESRTKSTKRI HRHLPVSSKF RNGTVEDGSN 801: TDETE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)