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AT1G04810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:14623887 (2004): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit; FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015), Armadillo-type fold (InterPro:IPR016024), 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (InterPro:IPR016642); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (TAIR:AT2G32730.1); Has 1171 Blast hits to 1071 proteins in 297 species: Archae - 14; Bacteria - 33; Metazoa - 390; Fungi - 382; Plants - 143; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Protein Annotations
BioGrid:24644eggNOG:COG5116eggNOG:KOG2062EMBL:AC004809
EMBL:AY242527EMBL:BT004007EMBL:CP002684EnsemblPlants:AT1G04810
EnsemblPlants:AT1G04810.1entrez:839409Gene3D:1.25.10.10GeneID:839409
Genevisible:Q9MAT0GO:GO:0000502GO:GO:0005634GO:GO:0005829
GO:GO:0005886GO:GO:0030163GO:GO:0030234GO:GO:0042176
Gramene:AT1G04810.1hmmpanther:PTHR10943hmmpanther:PTHR10943:SF3HOGENOM:HOG000189403
InParanoid:Q9MAT0IntAct:Q9MAT0InterPro:IPR002015InterPro:IPR011989
InterPro:IPR016024InterPro:IPR016642KEGG:ath:AT1G04810KO:K03032
ncoils:CoilOMA:TAQNENTPaxDb:Q9MAT0Pfam:PF01851
Pfam:PF13646Pfam:Q9MAT0PhylomeDB:Q9MAT0PIR:C86181
PIRSF:PIRSF015947PRIDE:Q9MAT0PRO:PR:Q9MAT0ProMEX:Q9MAT0
ProteinModelPortal:Q9MAT0Proteomes:UP000006548Reactome:R-ATH-1236978Reactome:R-ATH-174184
Reactome:R-ATH-349425Reactome:R-ATH-5632684Reactome:R-ATH-68949Reactome:R-ATH-69017
Reactome:R-ATH-983168RefSeq:NP_171973.1SMR:Q9MAT0STRING:3702.AT1G04810.1
SUPFAM:SSF48371TAIR:AT1G04810TMHMM:TMhelixUniGene:At.19689
UniProt:Q9MAT0
Coordinates (TAIR10) chr1:+:1350304..1355261
Molecular Weight (calculated) 108872.00 Da
IEP (calculated) 5.00
GRAVY (calculated) -0.06
Length 1001 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAAAMVSSAG GLLAMLNEPH PSLKLHALSY LIRLVDQFWP EISTSVPIIE SLYEDEEFDQ HQRQLAALLA SKVFYYLGEL NDSLSYALGA GSLFDVSEDS
0101: DYIHTLLSKA IDEYAILRSK AVESSEVVEI DPRLVAIVER MLDKCITDGK YQQAMGIAIE CRRLDKLEEA IIKSENVQGT LSYCINVSHS FVNQREYRHE
0201: VLRLLVNVYQ KLASPDYLSI CQCLMFLDEP QGVASILEKL LRSENKDDAL LAFQISFDLV QNEHQAFLMS VRDRLPAPKT RPVEAIQAVE TSTAQNENTA
0301: GDVQMADETP SQTIVHETDP VDAVYAERLT KAKGILSGET SIQLTLQFLY SHNKSDLLIL KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD
0401: WLSRATNWAK FSATAGLGVI HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTS VEVIQHGACL GLGLAALGTA
0501: DEDIYDDIKS VLYTDSAVAG EAAGISMGLL LVGTATDKAS EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY
0601: SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA
0701: MAMVMVQISE ASDSRVGAFR RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLTVFSQFW YWYPLIYFIS LAFSPTAFIG
0801: LNYDLKVPKF EFMSHAKPSL FEYPKPTTVA TANTAAKLPT AVLSTSAKAK AKAKKEAEQK AKAENSGNEA GKANAASDEK EAESMQVDST ATTVEKKVEP
0901: EATFEILVNP ARVVPSQEKY IKLMEDSRYV PMKLAPSGFV LLRDLRPHEP EVLSLTDAPT STASPAVGAE AAGQAQQAAT TSAMAIDDEP QPPQAFEYAS
1001: P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)