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AT1G75990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:14623889 (2004): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PAM domain (PCI/PINT associated module) protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PAM domain (PCI/PINT associated module) protein; FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, plasma membrane, proteasome regulatory particle, lid subcomplex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143), 26S proteasome regulatory subunit, C-terminal (InterPro:IPR013586); BEST Arabidopsis thaliana protein match is: PAM domain (PCI/PINT associated module) protein (TAIR:AT1G20200.1); Has 740 Blast hits to 739 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 313; Fungi - 146; Plants - 168; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
Protein Annotations
BioGrid:29150eggNOG:ENOG410XS40eggNOG:KOG2581EMBL:AC007396
EMBL:AY057508EMBL:BT015771EMBL:CP002684EnsemblPlants:AT1G75990
EnsemblPlants:AT1G75990.1entrez:843931Gene3D:1.10.10.10GeneID:843931
Genevisible:Q9LQR8GO:GO:0000502GO:GO:0005829GO:GO:0005886
GO:GO:0016020GO:GO:0030163GO:GO:0030234GO:GO:0042176
Gramene:AT1G75990.1hmmpanther:PTHR10758hmmpanther:PTHR10758:SF3HOGENOM:HOG000193909
InParanoid:Q9LQR8IntAct:Q9LQR8InterPro:IPR000717InterPro:IPR011991
InterPro:IPR013586iPTMnet:Q9LQR8KEGG:ath:AT1G75990KO:K03033
MINT:MINT-8063984ncoils:CoilOMA:PNTHREKPaxDb:Q9LQR8
Pfam:PF01399Pfam:PF08375Pfam:Q9LQR8PhylomeDB:Q9LQR8
PIR:E96788PRIDE:Q9LQR8PRO:PR:Q9LQR8ProteinModelPortal:Q9LQR8
Proteomes:UP000006548Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425
Reactome:R-ATH-5632684Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168
RefSeq:NP_177726.1SMART:SM00088SMR:Q9LQR8STRING:3702.AT1G75990.1
SUPFAM:SSF46785TAIR:AT1G75990UniGene:At.15402UniProt:Q9LQR8
Coordinates (TAIR10) chr1:-:28524623..28526718
Molecular Weight (calculated) 55594.50 Da
IEP (calculated) 8.52
GRAVY (calculated) -0.40
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MTQDVEMKDN QTPTQSVVSA PTSTLQNLKE IAALIDTGSY TKEVRRIARA VRLTVGLRRK LTGSVISSFL DFALVPGSEA HTRLSSFVPK SDEHDMEVDT
101: ASSNSQAPPK HLPAELEIYC YFIVLLFLID QKKYNEAKVC STASIARLKS VNRRTVDVIA SKLYFYYSLS YELTNDLAEI RSTLLALHHS ATLRHDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP VASLGFRIQC NKWAIIVRLL LGEIPERSIF
301: TQKGMEKTLR PYFELTNAVR IGDLELFGKI QEKFAKTFAE DRTHNLIVRL RHNVIRTGLR NISISYSRIS LQDVAQKLRL NSANPVADAE SIVAKAIRDG
401: AIDATIDHKN GCMVSKETGD IYSTNEPQTA FNSRIAFCLN MHNEAVRALR FPPNTHREKE SEEKRREMKQ QEEELAKYMA EEDDDDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)