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AT3G14790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : rhamnose biosynthesis 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
rhamnose biosynthesis 3 (RHM3); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT1G53500.1); Has 53605 Blast hits to 53390 proteins in 3033 species: Archae - 947; Bacteria - 30692; Metazoa - 1095; Fungi - 569; Plants - 1514; Viruses - 102; Other Eukaryotes - 18686 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G14790-MONOMERBioGrid:6041EC:1.1.1.-EC:4.2.1.76
EC:5.1.3.-eggNOG:COG1088eggNOG:KOG0747EMBL:AP002061
EMBL:AY078958EMBL:AY142060EMBL:CP002686EnsemblPlants:AT3G14790
EnsemblPlants:AT3G14790.1entrez:820707Gene3D:3.40.50.720GeneID:820707
Genevisible:Q9LH76GO:GO:0005829GO:GO:0009506GO:GO:0010253
GO:GO:0010280GO:GO:0016491GO:GO:0016853GO:GO:0050377
Gramene:AT3G14790.1gramene_pathway:4.2.1.76gramene_pathway:PWY-3261hmmpanther:PTHR10366
hmmpanther:PTHR10366:SF385HOGENOM:HOG000167988InParanoid:Q9LH76IntAct:Q9LH76
InterPro:IPR016040InterPro:IPR029903iPTMnet:Q9LH76KEGG:ath:AT3G14790
KO:K12450OMA:AYDKEHPPaxDb:Q9LH76Pfam:PF04321
Pfam:PF16363Pfam:Q9LH76PhylomeDB:Q9LH76PRIDE:Q9LH76
PRO:PR:Q9LH76ProteinModelPortal:Q9LH76Proteomes:UP000006548RefSeq:NP_188097.1
SMR:Q9LH76STRING:3702.AT3G14790.1SUPFAM:SSF51735TAIR:AT3G14790
tair10-symbols:ATRHM3tair10-symbols:RHM3UniGene:At.27812UniProt:Q9LH76
Coordinates (TAIR10) chr3:+:4964791..4966875
Molecular Weight (calculated) 74918.20 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.41
Length 664 amino acids
Sequence (TAIR10)
(BLAST)
001: MATYKPKNIL ITGAAGFIAS HVANRLVRSY PDYKIVVLDK LDYCSNLKNL NPSKSSPNFK FVKGDIASAD LVNYLLITEE IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDASVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMNG KPLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVNHVYNI GTTRERRVID VANDISKLFG IDPDSTIQYV ENRPFNDQRY FLDDQKLKKL
301: GWCERTNWEE GLRKTMEWYT ENPEWWGDVS GALLPHPRML MMPGDRHSDG SDEHKNADGN QTFTVVTPTK AGCSGDKRSL KFLIYGKTGW LGGLLGKLCE
401: KQGIPYEYGK GRLEDRASLI ADIRSIKPSH VFNAAGLTGR PNVDWCESHK TETIRVNVAG TLTLADVCRE NDLLMMNFAT GCIFEYDAAH PEGSGIGFKE
501: EDKPNFTGSF YSKTKAMVEE LLREFDNVCT LRVRMPISSD LNNPRNFITK ISRYNKVVNI PNSMTILDEL LPISIEMAKR NLRGIWNFTN PGVVSHNEIL
601: EMYKSYIEPD FKWSNFNLEE QAKVIVAPRS NNEMDGAKLS KEFPEMLSIK DSLIKYVFEP NKRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)