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AT5G10810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.634
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : enhancer of rudimentary protein, putative
Curator
Summary (TAIR10)
enhancer of rudimentary homolog ATER
Computational
Description (TAIR10)
ENHANCER OF RUDIMENTARY HOMOLOGUE (ER); CONTAINS InterPro DOMAIN/s: Enhancer of rudimentary (InterPro:IPR000781); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111Z48eggNOG:KOG1766EMBL:AK117573EnsemblPlants:AT5G10810
EnsemblPlants:AT5G10810.1entrez:830948ExpressionAtlas:Q541Y0GeneID:830948
GO:GO:0006221GO:GO:0007049GO:GO:0045747Gramene:AT5G10810.1
hmmpanther:PTHR12373InterPro:IPR000781KEGG:ath:AT5G10810OMA:RTWSDYE
PANTHER:PTHR12373PaxDb:Q541Y0Pfam:PF01133Pfam:Q96319
PhylomeDB:Q541Y0PIRSF:PIRSF016393PRIDE:Q541Y0ProDom:PD008105
PROSITE:PS01290ProteinModelPortal:Q541Y0RefSeq:NP_568240.1scanprosite:PS01290
SMR:Q541Y0STRING:3702.AT5G10810.1SUPFAM:0053200SUPFAM:SSF143875
TAIR:AT5G10810tair10-symbols:ATERtair10-symbols:ERUniGene:At.20502
UniProt:Q541Y0UniProt:Q96319
Coordinates (TAIR10) chr5:-:3418897..3420556
Molecular Weight (calculated) 12502.90 Da
IEP (calculated) 8.98
GRAVY (calculated) -0.44
Length 109 amino acids
Sequence (TAIR10)
(BLAST)
001: MANHNSSRHT IILLQNSPSR ATRTFMDYDS IGQAMDGICG LYERKLKEIN PSLRNISYDI ADLYNFIDGL ADLSALVYDH SISAYLPYDR QWIKQKAFHH
101: LKRIANGGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)